ViewGene
Locus Name:
GeneID:
Location:

GeneID:4664
TrivialName: PA14_59980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59980
PAO1 Ortholog Locus:
Sequence Length:432
Protein Length:143
Start: 5341357
Stop: 5341788
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84145.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 143/143 (100%), Positives = 143/143 (100%)
Sequence:
ATGCCTCTTCATCACTCCCCCCCTGGCCGGCGGCCACCAACGCTGGCCGTTGGCGTACTACTGGTACTGCTG
AGCAGCGCGAGTCAGGCCGAAACCTGGGTCATCACCGACAAGGCTCATCCGGTCTCTGCCACCGGATCGTCG
CGCGTTCTGTTTCTGGACGCCCAGGAACACCTCGAGGAGCAACTGACTGCGGCCTTGCCCCAGGATCCACAG
CATGCTCAAGCGGCGTTTAAGCGATTGCTACAAAGCCCCGATGGGCGCCGCCTGCAGGCAGAGCTGGTCAAG
GCACAACAAGACGTCGCCGATGCGTGGAGTCTCGGTGTCGAGAAGATCCCTGCCGTAGTAGTCGATAGGCAG
TACGTGGTCTACGGCGAACCGGATGTTTCGCGCGCTCTTGAGCTAATCGCCAAGGCCAGGAGGTCGCGCTGA
Translation:
MPLHHSPPGRRPPTLAVGVLLVLLSSASQAETWVITDKAHPVSATGSSRVLFLDAQEHLEEQLTAALPQDPQ
HAQAAFKRLLQSPDGRRLQAELVKAQQDVADAWSLGVEKIPAVVVDRQYVVYGEPDVSRALELIAKARRSR*
AnnotationID:4670GeneID:4664
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:20
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9329




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26470




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4664
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
185946
                           gb|AAP84145.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           143
                           99.99
                           99.99
                           0
                           718.0
     

     
     
185947
                           gb|AAP94688.1|
                           (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa]
                           143
                           83.91
                           90.90
                           0
                           601.0
     

     
     
185952
                           gb|AAN62137.1|AF440523_44
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           153
                           42.48
                           56.86
                           15
                           266.0
     

     
     
185948
                           gb|AAN62274.1|AF440524_61
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           153
                           41.83
                           54.90
                           18
                           272.0
     

     
     
185951
                           emb|CAE92908.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           149
                           41.61
                           56.37
                           7
                           269.0
     

     






      

          
GC ORFID: 47666How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL018Glimmer Score: 

          
Start: 4605036Stop: 4605467

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL018 143 Homolog: XAC2282 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37135) translation of RL018Homolog Bit Score 281.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1654 (ORF: BLASTX 115.0), t_RL018 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTCTTCATCACTCCCCCCCTGGCCGGCGGCCACCAACGCTGGCCGTTGGCGTACTACTGGTACTGCTG 
AGCAGCGCGAGTCAGGCCGAAACCTGGGTCATCACCGACAAGGCTCATCCGGTCTCTGCCACCGGATCGTCG 
CGCGTTCTGTTTCTGGACGCCCAGGAACACCTCGAGGAGCAACTGACTGCGGCCTTGCCCCAGGATCCACAG 
CATGCTCAAGCGGCGTTTAAGCGATTGCTACAAAGCCCCGATGGGCGCCGCCTGCAGGCAGAGCTGGTCAAG 
GCACAACAAGACGTCGCCGATGCGTGGAGTCTCGGTGTCGAGAAGATCCCTGCCGTAGTAGTCGATAGGCAG 
TACGTGGTCTACGGCGAACCGGATGTTTCGCGCGCTCTTGAGCTAATCGCCAAGGCCAGGAGGTCGCGCTGA