ViewGene
Locus Name:
GeneID:
Location:

GeneID:4610
TrivialName: PA14_44310
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44310
PAO1 Ortholog Locus:PA1560
Sequence Length:429
Protein Length:142
Start: 3945607
Stop: 3945179
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04949.1|AE004584_5 (AE004584) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/142 (100%), Positives = 142/142 (100%)
Sequence:
GTGATCCCGGTCGACTACTGCGCCGAGGCGCTGATCGGCCTGGCGCTGAAGCCGTGCCTGGGGCACAGCCTC
TACCATATCTCCGCCGGCCATCGCGCGGCCTGCACCTTCGGTGAGATCGACGAGGCCTTCGCCCGCGCCAAC
GGGGCGGCGCCGGTAGGCGAGCGCTACCGCAAGGTGGAGGTGGACGACCTCAAGGAACTGGCGAAGAGCTTC
GAGTCGCGCATCGGCCCGGCCAATCCGCGTCTGGTCCTGCGCGCGTTGCGCTTGTACAGCGGCTTTGCCGAC
CTCAACTACCTGTTCGACAACAGCCGTCTGCTTGAGGAGGGGATCTCCGCGCCACCGCGCTTCACCGACTAC
CTCGACGTCTGCGTGCAGTCGTCCAGCGCGGTGAGCATCCCGGCGCAGATGCAATGGGACTTCAAGTGA
Translation:
MIPVDYCAEALIGLALKPCLGHSLYHISAGHRAACTFGEIDEAFARANGAAPVGERYRKVEVDDLKELAKSF
ESRIGPANPRLVLRALRLYSGFADLNYLFDNSRLLEEGISAPPRFTDYLDVCVQSSSAVSIPAQMQWDFK*
AnnotationID:4616GeneID:4610
AnnotatorUID: diggins
Modification Date/Time: 2006-02-07 06:06:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1560
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO49613.1| (AF550679) HlyF [Escherichia coli]
          Length = 369

 Score =  133 bits (334), Expect = 3e-31
 Identities = 66/142 (46%), Positives = 90/142 (63%)

>gb|AAM86163.1|AE013862_8 (AE013862) putative hemolysin [Yersinia pestis KIM]
          Length = 379

 Score =  128 bits (321), Expect = 1e-29
 Identities = 66/142 (46%), Positives = 88/142 (61%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15136




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26362




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4610
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6978
                           PA1560_tr
                           translation of PA1560
                           142
                           99.99
                           99.99
                           0
                           737.0
     

     
     
185238
                           gb|AAG04949.1|AE004584_5
                           (AE004584) hypothetical protein PA1560 [Pseudomonas aeruginosa PAO1]
                           142
                           99.29
                           99.99
                           0
                           734.0
     

     
     
185239
                           gb|AAO49613.1|
                           (AF550679) HlyF [Escherichia coli]
                           369
                           18.15
                           24.39
                           227
                           337.0
     

     
     
185240
                           gb|AAM86163.1|AE013862_8
                           (AE013862) putative hemolysin [Yersinia pestis KIM]
                           379
                           17.67
                           23.21
                           237
                           324.0
     

     
     
185241
                           emb|CAC90381.1|
                           (AJ414149) hypothetical protein [Yersinia pestis CO92]
                           379
                           17.67
                           23.21
                           237
                           324.0
     

     






      

          
GC ORFID: 47612How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1560Glimmer Score: 

          
Start: 1008302Stop: 1008730

          
Length: 429


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1560 translation of PA1560Homolog Bit Score 288.0

          
Other Homologs:  t_PA1559 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCCCGGTCGACTACTGCGCCGAGGCGCTGATCGGCCTGGCGCTGAAGCCGTGCCTGGGGCACAGCCTC 
TACCATATCTCCGCCGGCCATCGCGCGGCCTGCACCTTCGGTGAGATCGACGAGGCCTTCGCCCGCGCCAAC 
GGGGCGGCGCCGGTAGGCGAGCGCTACCGCAAGGTGGAGGTGGACGACCTCAAGGAACTGGCGAAGAGCTTC 
GAGTCGCGCATCGGCCCGGCCAATCCGCGTCTGGTCCTGCGCGCGTTGCGCTTGTACAGCGGCTTTGCCGAC 
CTCAACTACCTGTTCGACAACAGCCGTCTGCTTGAGGAGGGGATCTCCGCGCCACCGCGCTTCACCGACTAC 
CTCGACGTCTGCGTGCAGTCGTCCAGCGCGGTGAGCATCCCGGCGCAGATGCAATGGGACTTCAAGTGA