ViewGene
Locus Name:
GeneID:
Location:

GeneID:4588
TrivialName: PA14_50080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50080
PAO1 Ortholog Locus:PA1105
Sequence Length:444
Protein Length:147
Start: 4452541
Stop: 4452098
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04494.1|AE004540_14 (AE004540) flagellar protein FliJ [Pseudomonas aeruginosa PAO1]
Identities = 147/147 (100%), Positives = 147/147 (100%)
Sequence:
ATGGAGAAGCGCGCGGCGCGGCTGGCGCCGGTGGTGGACATGGCCAGCAAGGCCGAGCGGGATGCCGCGACC
CAGCTGGGCAGGTGCCAGCAGCAATTGCTCGCGGCACAGCAGAAGCTGGCGGAGCTGGAACGCTACCGCAAC
GACTACCAGCAGCAATGGATCAGCCAGGGCCAGAAGGGCGTCAGCGGCCAGTGGCTGATGAACTACCAGCGC
TTCCTCTCGCAACTGGAGACCGCCGTCGCCCAGCAGGCCAACAGCGTGACCTGGCACCGCGAGGCGGTGGAC
AAGGCGCGGCTCAACTGGCAGGAGAGATACGCCCGCCTGGAAGGGCTGCGCAAGCTGGTCGAGCGCTACCTG
GAAGAGGCGCGCCAGGCCGAGGACAAGCGCGAGCAGAAACAGCTCGACGAACTCGCCCAGCGTACCCGCCGC
CAGGACGACTGA
Translation:
MEKRAARLAPVVDMASKAERDAATQLGRCQQQLLAAQQKLAELERYRNDYQQQWISQGQKGVSGQWLMNYQR
FLSQLETAVAQQANSVTWHREAVDKARLNWQERYARLEGLRKLVERYLEEARQAEDKREQKQLDELAQRTRR
QDD*
AnnotationID:4594GeneID:4588
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 12:12:48
Gene Name:fliJ
Confidence Code:2
GeneProduct:flagellar protein FliJ
Cell Localization:()
Synonyms:PA1105
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:
COG2882, FliJ, Flagellar biosynthesis chaperone. Score: 81.9, 3e-17
pfam02050, FliJ, Flagellar FliJ protein. Score: 52.6, 2e-08
Structural Features:






   
Genomic Context:
Adjacent to other genes involved in flagellar biosynthesis. 






   
Comment:


















    ReferenceID:9177




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26318




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4588
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6954
                           PA1105_tr
                           translation of PA1105
                           147
                           99.99
                           99.99
                           0
                           748.0
     

     
     
184945
                           gb|AAG04494.1|AE004540_14
                           (AE004540) flagellar protein FliJ [Pseudomonas aeruginosa PAO1]
                           147
                           99.99
                           99.99
                           0
                           748.0
     

     
     
184946
                           gb|AAN69943.1|AE016633_1
                           (AE016790) flagellar protein FliJ [Pseudomonas putida KT2440]
                           150
                           63.33
                           78.00
                           3
                           491.0
     

     
     
184947
                           gb|AAO55480.1|
                           (AE016862) flagellar protein FliJ, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           149
                           60.40
                           75.83
                           2
                           470.0
     

     






      

          
GC ORFID: 47590How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1105Glimmer Score: 

          
Start: 501367Stop: 501810

          
Length: 444


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1105 translation of PA1105Homolog Bit Score 292.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7922 (ORF: BLASTX 186.0), t_PA1105 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGAAGCGCGCGGCGCGGCTGGCGCCGGTGGTGGACATGGCCAGCAAGGCCGAGCGGGATGCCGCGACC 
CAGCTGGGCAGGTGCCAGCAGCAATTGCTCGCGGCACAGCAGAAGCTGGCGGAGCTGGAACGCTACCGCAAC 
GACTACCAGCAGCAATGGATCAGCCAGGGCCAGAAGGGCGTCAGCGGCCAGTGGCTGATGAACTACCAGCGC 
TTCCTCTCGCAACTGGAGACCGCCGTCGCCCAGCAGGCCAACAGCGTGACCTGGCACCGCGAGGCGGTGGAC 
AAGGCGCGGCTCAACTGGCAGGAGAGATACGCCCGCCTGGAAGGGCTGCGCAAGCTGGTCGAGCGCTACCTG 
GAAGAGGCGCGCCAGGCCGAGGACAAGCGCGAGCAGAAACAGCTCGACGAACTCGCCCAGCGTACCCGCCGC 
CAGGACGACTGA