ViewGene
Locus Name:
GeneID:
Location:

GeneID:4579
TrivialName: PA14_58620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58620
PAO1 Ortholog Locus:PA4518
Sequence Length:426
Protein Length:141
Start: 5223705
Stop: 5223280
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07906.1|AE004865_7 (AE004865) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGACAGGTAACGGTGTTTCCCTGGTGACCCTCGGGGTCGCCGATCTGGCCCGCTCCTCTCTCTACTACCAG
GCGCTGGGCTGGCAGCCCTCTTCGGACGGCAACGAGCAGGTGGTATTTCTCAAGGGCCGCAACCTGGTCCTC
GGCCTCTACGGACGCAGCGCCCTCGCCGAGGATGCGCAGGTGGAAGATCGTCCGACCGGCTTCGCGGCTATC
ACCCTGGCCTGCAACTGCGCCTCGCGGGACGAGGTGGACCGTCTGTTCTCCGCAGCTACGGCGGCCGGCGGG
CAGGCGACCAAGATGCCGCAGGAAGTGTTCTGGGGTGGCTACTCCGGATATGTCGCCGACCCGGATGGACAC
CTTTGGGAAATTGCCTACAACCCGTTCTGGCCGTTCGACGAGCAGGGCAACCTGGTCTTGCCCTGA
Translation:
MTGNGVSLVTLGVADLARSSLYYQALGWQPSSDGNEQVVFLKGRNLVLGLYGRSALAEDAQVEDRPTGFAAI
TLACNCASRDEVDRLFSAATAAGGQATKMPQEVFWGGYSGYVADPDGHLWEIAYNPFWPFDEQGNLVLP*
AnnotationID:4585GeneID:4579
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 14:02:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4518
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9159




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26301




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31565




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4579_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4579
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6945
                           PA4518_tr
                           translation of PA4518
                           141
                           99.99
                           99.99
                           0
                           749.0
     

     
     
184855
                           gb|AAG07906.1|AE004865_7
                           (AE004865) hypothetical protein PA4518 [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           749.0
     

     
     
184857
                           gb|AAN50980.1|AE011533_12
                           (AE011533) Glyoxalase/Bleomycin resistance protein/Dioxygenase family protein [Leptospira interrogans serovar lai str. 56601]
                           144
                           39.58
                           53.47
                           13
                           247.0
     

     
     
184856
                           dbj|BAC14176.1|
                           (AP004600) hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
                           158
                           38.60
                           53.79
                           19
                           291.0
     

     






      

          
GC ORFID: 47581How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4518Glimmer Score: 

          
Start: 4487384Stop: 4486959

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4518 translation of PA4518Homolog Bit Score 293.0

          
Other Homologs:  t_PA4518 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAGGTAACGGTGTTTCCCTGGTGACCCTCGGGGTCGCCGATCTGGCCCGCTCCTCTCTCTACTACCAG 
GCGCTGGGCTGGCAGCCCTCTTCGGACGGCAACGAGCAGGTGGTATTTCTCAAGGGCCGCAACCTGGTCCTC 
GGCCTCTACGGACGCAGCGCCCTCGCCGAGGATGCGCAGGTGGAAGATCGTCCGACCGGCTTCGCGGCTATC 
ACCCTGGCCTGCAACTGCGCCTCGCGGGACGAGGTGGACCGTCTGTTCTCCGCAGCTACGGCGGCCGGCGGG 
CAGGCGACCAAGATGCCGCAGGAAGTGTTCTGGGGTGGCTACTCCGGATATGTCGCCGACCCGGATGGACAC 
CTTTGGGAAATTGCCTACAACCCGTTCTGGCCGTTCGACGAGCAGGGCAACCTGGTCTTGCCCTGA