ViewGene
Locus Name:
GeneID:
Location:

GeneID:4573
TrivialName: PA14_43720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43720
PAO1 Ortholog Locus:PA1607
Sequence Length:441
Protein Length:146
Start: 3893718
Stop: 3894158
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04996.1|AE004588_9 (AE004588) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 146/146 (100%), Positives = 146/146 (100%)
Sequence:
ATGGTCAAGCGCACCAGCCACAAGCAAGCCAGTTGTCCAGTCGCCCGCCCGCTGGACGTGATCGGCGACGGC
TGGTCGATGCTCATCGTGCGCGATGCCTTCGAAGGACTGACGCGCTTCGGCGAATTCCAGAAGAGCCTCGGC
CTGGCCAAGAACATCCTGGCGGCGCGCCTGCGCAACCTGGTGGAGCACGGCGTGATGGTGGCGGTCCCGGCC
GAAAGCGGCAGTCACCAGGAATACCGCCTGACTGACAAGGGACGCGCGCTCTTCCCCCTGCTGGTGGCGATT
CGGCAGTGGGGCGAGGACTATTTCTTCGCCCCGGACGAATCCCATGTCCGCCTGGTCGAGCGCGACAGCGGC
CAGCCGGTGCCGCGCCTGCAGGTACGCGCCGGCGACGGCAGTCCGCTCGCCGCGGAAGATACCCGGGTCAGC
AGGGACTGA
Translation:
MVKRTSHKQASCPVARPLDVIGDGWSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPA
ESGSHQEYRLTDKGRALFPLLVAIRQWGEDYFFAPDESHVRLVERDSGQPVPRLQVRAGDGSPLAAEDTRVS
RD*
AnnotationID:4579GeneID:4573
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 17:05:23
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1607
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1733,pfam01638
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC50374.1| (AP005953) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 156

 Score =  157 bits (396), Expect = 2e-38
 Identities = 79/144 (54%), Positives = 104/144 (72%), Gaps = 1/144 (0%)

>emb|CAE36572.1| (BX640426) putative transcriptional regulator [Bordetella
           parapertussis]
          Length = 142

 Score =  138 bits (347), Expect = 1e-32
 Identities = 73/138 (52%), Positives = 95/138 (68%), Gaps = 1/138 (0%)






 
Structural Features:
COG1733, COG1733, Predicted transcriptional regulators [Transcription]
CD-Length = 120 residues, 100.0% aligned
Score =  113 bits (283), Expect = 1e-26
Identities = 49/120 (40%), Positives = 75/120 (62%), Gaps = 2/120 (1%)

pfam01638, DUF24, Transcriptional regulator.
CD-Length = 91 residues,  94.5% aligned
Score = 78.7 bits (194), Expect = 3e-16
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9147




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26289




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37216




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4573_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4573
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6938
                           PA1607_tr
                           translation of PA1607
                           146
                           99.99
                           99.99
                           0
                           751.0
     

     
     
184824
                           gb|AAG04996.1|AE004588_9
                           (AE004588) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           146
                           99.99
                           99.99
                           0
                           751.0
     

     
     
184825
                           emb|CAE29073.1|
                           (BX572604) DUF24, predicted transcriptional regulator, related to MarR family [Rhodopseudomonas palustris CGA009]
                           160
                           51.25
                           65.62
                           14
                           404.0
     

     
     
184829
                           emb|CAE32827.1|
                           (BX640444) putative transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           150
                           50.66
                           66.00
                           6
                           355.0
     

     
     
184826
                           dbj|BAC50374.1|
                           (AP005953) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110]
                           156
                           50.64
                           66.66
                           10
                           394.0
     

     






      

          
GC ORFID: 47575How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1607Glimmer Score: 

          
Start: 1060191Stop: 1059751

          
Length: 441


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1607 translation of PA1607Homolog Bit Score 293.0

          
Other Homologs:  t_PA1607 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCAAGCGCACCAGCCACAAGCAAGCCAGTTGTCCAGTCGCCCGCCCGCTGGACGTGATCGGCGACGGC 
TGGTCGATGCTCATCGTGCGCGATGCCTTCGAAGGACTGACGCGCTTCGGCGAATTCCAGAAGAGCCTCGGC 
CTGGCCAAGAACATCCTGGCGGCGCGCCTGCGCAACCTGGTGGAGCACGGCGTGATGGTGGCGGTCCCGGCC 
GAAAGCGGCAGTCACCAGGAATACCGCCTGACTGACAAGGGACGCGCGCTCTTCCCCCTGCTGGTGGCGATT 
CGGCAGTGGGGCGAGGACTATTTCTTCGCCCCGGACGAATCCCATGTCCGCCTGGTCGAGCGCGACAGCGGC 
CAGCCGGTGCCGCGCCTGCAGGTACGCGCCGGCGACGGCAGTCCGCTCGCCGCGGAAGATACCCGGGTCAGC 
AGGGACTGA