ViewGene
Locus Name:
GeneID:
Location:

GeneID:4562
TrivialName: PA14_38850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38850
PAO1 Ortholog Locus:PA1983
Sequence Length:438
Protein Length:145
Start: 3464727
Stop: 3464290
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAC79658.1| (AF068264) cytochrome c550 precursor [Pseudomonas aeruginosa]
Identities = 144/145 (99%), Positives = 145/145 (100%)
Sequence:
ATGAACAAGAACAACGCCTTGCGCGGCCTGCTGGTGCTGGCCGGTCTCAGCCTCTCGAGCCTGGCGCTGGCC
CACGGCGATGTGACCCCCCAGGCAGTGGACACCAAGGGACTCGAGCCGCTGGGCAAGGAATGGCGCGACACC
AACCCCTACCGCGAGCCCTACGCCAAGCACGACCTCGCCGTCGAGATCGGCGCCTCCGCCTACAACCAGAAC
TGCGCGCGCTGCCACGGCCTGGAAGCCAAGTCCGGCGGCATCGCCCCGGACCTGCGCCTGCTGGAGACCGGC
GCCGAGGGCGACGAATGGTTCAAGGAGCGGGTCATCAACGGCGCGGTGCGCGATGGCGCGGTGTACATGCCG
AAGATGGCCGACTTCATCAGCCAGGAAGGCCTCTGGGCGATCCGCAGCTATCTGGAAAGCGTGCACGTCGAC
GAGTGA
Translation:
MNKNNALRGLLVLAGLSLSSLALAHGDVTPQAVDTKGLEPLGKEWRDTNPYREPYAKHDLAVEIGASAYNQN
CARCHGLEAKSGGIAPDLRLLETGAEGDEWFKERVINGAVRDGAVYMPKMADFISQEGLWAIRSYLESVHVD
E*
AnnotationID:4568GeneID:4562
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 16:04:29
Gene Name:exaB
Confidence Code:1
GeneProduct:cytochrome c550 precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2010
Secondary Functional Category(ies):carbon compound catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68283.1|AE016462_9 (AE016784) cytochrome c-type protein [Pseudomonas putida KT2440]
          Length = 153

 Score =  189 bits (479), Expect = 5e-48
 Identities = 96/151 (63%), Positives = 111/151 (73%), Gaps = 9/151 (5%)








 
Structural Features:
COG2010, CccA, Cytochrome c, mono- and diheme variants 
[Energy production and conversion]
CD-Length = 150 residues,  70.0% aligned
Score = 53.8 bits (128), Expect = 7e-09
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 3/108 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9125




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26267




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32743




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4562_cdd.html


    		




 
URL:

















    ReferenceID:34367




  
Author/Investigator(s):
        Gorisch H.





  
Title:
        The ethanol oxidation system and its regulation in Pseudomonas aeruginosa.




  
PubMed:
        12686116


MedLine:
        




    
Source:
Biochim Biophys Acta. 2003 Apr 11;1647(1-2):98-102.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12686116









           
Homologs By Global Alignment 

           

       



     
Gene ID:4562
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
184635
                           gb|AAC79658.1|
                           (AF068264) cytochrome c550 precursor [Pseudomonas aeruginosa]
                           145
                           99.31
                           99.99
                           0
                           757.0
     

     
     
6927
                           PA1983_tr
                           translation of PA1983
                           145
                           98.62
                           99.31
                           0
                           753.0
     

     
     
184636
                           gb|AAG05371.1|AE004625_1
                           (AE004625) cytochrome c550 [Pseudomonas aeruginosa PAO1]
                           145
                           98.62
                           99.31
                           0
                           753.0
     

     
     
184637
                           gb|AAN68283.1|AE016462_9
                           (AE016784) cytochrome c-type protein [Pseudomonas putida KT2440]
                           154
                           62.33
                           72.07
                           10
                           485.0
     

     






      

          
GC ORFID: 47564How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1983Glimmer Score: 

          
Start: 1489184Stop: 1489621

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1983 translation of PA1983Homolog Bit Score 294.0

          
Other Homologs:  t_PA1983 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGAACAACGCCTTGCGCGGCCTGCTGGTGCTGGCCGGTCTCAGCCTCTCGAGCCTGGCGCTGGCC 
CACGGCGATGTGACCCCCCAGGCAGTGGACACCAAGGGACTCGAGCCGCTGGGCAAGGAATGGCGCGACACC 
AACCCCTACCGCGAGCCCTACGCCAAGCACGACCTCGCCGTCGAGATCGGCGCCTCCGCCTACAACCAGAAC 
TGCGCGCGCTGCCACGGCCTGGAAGCCAAGTCCGGCGGCATCGCCCCGGACCTGCGCCTGCTGGAGACCGGC 
GCCGAGGGCGACGAATGGTTCAAGGAGCGGGTCATCAACGGCGCGGTGCGCGATGGCGCGGTGTACATGCCG 
AAGATGGCCGACTTCATCAGCCAGGAAGGCCTCTGGGCGATCCGCAGCTATCTGGAAAGCGTGCACGTCGAC 
GAGTGA