ViewGene
Locus Name:
GeneID:
Location:

GeneID:4556
TrivialName: PA14_22740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22740
PAO1 Ortholog Locus:PA3205
Sequence Length:441
Protein Length:146
Start: 1978560
Stop: 1978120
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06593.1|AE004744_8 (AE004744) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/146 (99%), Positives = 146/146 (100%)
Sequence:
ATGCGCAAGACGCTAACCGCCCTGTTCATCGCCGCCGCCCTGCCGACCTTCGCCATGGCCGCGCCCGCCGCC
AACGACCTGCCGCCCCCGCCGATGGAAGGCGGCCACATGATGGGCCAGCACGGTCCCCGGCATGGCGGCCCG
ATGAAGGAACTGAACCTGACCCGCGAACAGCGCCAGCAGATGGGCAAACTGATGGGCGAACAGATGAAGGCC
CGCCACGAGATCACCCAGCGCTACCTGGCCAAGCTGCCGGCGGCCGAGCAGAAGGCCCTGAAGGACGAACTC
AAGGCCAGCCACGAGAAGACCCAGAAAGACATCCGCGCCCTGCTCACCCCCGAGCAGCAGAAGAAGTTCGAC
GAACTGCAGAAGAAGCGCGAGCAGCGCAAGGCAGAGTGGGCCGAATTCCAGCAATGGAAGGCCGACAAGAAG
TCCAACTGA
Translation:
MRKTLTALFIAAALPTFAMAAPAANDLPPPPMEGGHMMGQHGPRHGGPMKELNLTREQRQQMGKLMGEQMKA
RHEITQRYLAKLPAAEQKALKDELKASHEKTQKDIRALLTPEQQKKFDELQKKREQRKAEWAEFQQWKADKK
SN*
AnnotationID:4562GeneID:4556
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:12
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic inhibitor/zinc-resistance associated protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3678
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3678, CpxP, P pilus assembly/Cpx signaling pathway, 
periplasmic inhibitor/zinc-resistance associated protein
[Intracellular trafficking and secretion / Cell motility and secretio / 
Signal transduction mechanisms / Inorganic ion transport and metabolism]
CD-Length = 160 residues,  92.5% aligned
Score = 77.7 bits (191), Expect = 6e-16
Identities = 46/149 (30%), Positives = 64/149 (42%), Gaps = 4/149 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9113




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26255




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32339




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4556_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4556
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6920
                           PA3205_tr
                           translation of PA3205
                           146
                           99.31
                           99.99
                           0
                           756.0
     

     
     
184503
                           gb|AAG06593.1|AE004744_8
                           (AE004744) hypothetical protein PA3205 [Pseudomonas aeruginosa PAO1]
                           146
                           99.31
                           99.99
                           0
                           756.0
     

     
     
184505
                           gb|AAN70078.1|AE016647_8
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           151
                           56.95
                           71.52
                           18
                           416.0
     

     
     
184504
                           gb|AAO55325.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           159
                           54.71
                           67.92
                           18
                           422.0
     

     






      

          
GC ORFID: 47558How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3205Glimmer Score: 

          
Start: 2975371Stop: 2975811

          
Length: 441


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3205 translation of PA3205Homolog Bit Score 295.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1551 (ORF: BLASTX 131.0), t_PA3205 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAAGACGCTAACCGCCCTGTTCATCGCCGCCGCCCTGCCGACCTTCGCCATGGCCGCGCCCGCCGCC 
AACGACCTGCCGCCCCCGCCGATGGAAGGCGGCCACATGATGGGCCAGCACGGTCCCCGGCATGGCGGCCCG 
ATGAAGGAACTGAACCTGACCCGCGAACAGCGCCAGCAGATGGGCAAACTGATGGGCGAACAGATGAAGGCC 
CGCCACGAGATCACCCAGCGCTACCTGGCCAAGCTGCCGGCGGCCGAGCAGAAGGCCCTGAAGGACGAACTC 
AAGGCCAGCCACGAGAAGACCCAGAAAGACATCCGCGCCCTGCTCACCCCCGAGCAGCAGAAGAAGTTCGAC 
GAACTGCAGAAGAAGCGCGAGCAGCGCAAGGCAGAGTGGGCCGAATTCCAGCAATGGAAGGCCGACAAGAAG 
TCCAACTGA