ViewGene
Locus Name:
GeneID:
Location:

GeneID:4519
TrivialName: PA14_68830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68830
PAO1 Ortholog Locus:PA5211
Sequence Length:453
Protein Length:150
Start: 6139446
Stop: 6139898
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08596.1|AE004934_3 (AE004934) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 149/150 (99%), Positives = 149/150 (99%)
Sequence:
ATGGAAATCCTGCTGCTACGCCTGGACTTCTGGGACTGGCTGGCCTTCGGTACCGTCCTCCTGCTCCTGGAA
ATCTTCGGTGCCGGCGGCTATCTGCTGCGGGTCGGCCTCACCGCCGCTTGTGTCGGTGCGCTCGGCGCGCTC
CTGCCGGGACTGGCCTGGCCCTGGCAGGTAGGGCTGTTCGTCCTGCTCTCCGGGCTGGTCGCCGCCTTGCAT
CGACGCCGTCGCCGCAAGGCCGGTAGCGTCGAGGAAACGCCAGGGTTGCAGCGACGCGGCGACGACCTGTTC
GGCCGCACCTTTCCCTTGCACCGGGCGATCGTCGGCGGGCTCGGCGAGCTGCGCGTCGAGGACGCGTTATGG
CTGGTCAGCGGTCCCGACCTGCCGCGCGGCGCCCTGGTCCGGGTCACCGGCCAGGACGGCGCCCTGCTGCAC
GTCGAGCCTGCCGCTCCCTGA
Translation:
MEILLLRLDFWDWLAFGTVLLLLEIFGAGGYLLRVGLTAACVGALGALLPGLAWPWQVGLFVLLSGLVAALH
RRRRRKAGSVEETPGLQRRGDDLFGRTFPLHRAIVGGLGELRVEDALWLVSGPDLPRGALVRVTGQDGALLH
VEPAAP*
AnnotationID:4525GeneID:4519
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:11
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5211
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1585
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1585, COG1585, Membrane protein implicated in regulation 
of membrane protease activity 
[Posttranslational modification, protein turnover, chaperones / 
Intracellular trafficking and secretion]
CD-Length = 140 residues, 100.0% aligned
Score = 95.4 bits (237), Expect = 2e-21
Identities = 58/144 (40%), Positives = 76/144 (52%), Gaps = 5/144 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9039




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26181




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34841




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4519_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4519
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6874
                           PA5211_tr
                           translation of PA5211
                           150
                           99.33
                           99.33
                           0
                           772.0
     

     
     
183773
                           gb|AAG08596.1|AE004934_3
                           (AE004934) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           150
                           99.33
                           99.33
                           0
                           772.0
     

     
     
183774
                           emb|CAE26321.1|
                           (BX572595) conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
                           154
                           41.55
                           52.59
                           9
                           272.0
     

     
     
183775
                           gb|AAM42150.1|
                           (AE012401) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           150
                           38.00
                           52.66
                           6
                           256.0
     

     






      

          
GC ORFID: 47521How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5211Glimmer Score: 

          
Start: 5403132Stop: 5403584

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5211 translation of PA5211Homolog Bit Score 301.0

          
Other Homologs:  t_PA5211 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAATCCTGCTGCTACGCCTGGACTTCTGGGACTGGCTGGCCTTCGGTACCGTCCTCCTGCTCCTGGAA 
ATCTTCGGTGCCGGCGGCTATCTGCTGCGGGTCGGCCTCACCGCCGCTTGTGTCGGTGCGCTCGGCGCGCTC 
CTGCCGGGACTGGCCTGGCCCTGGCAGGTAGGGCTGTTCGTCCTGCTCTCCGGGCTGGTCGCCGCCTTGCAT 
CGACGCCGTCGCCGCAAGGCCGGTAGCGTCGAGGAAACGCCAGGGTTGCAGCGACGCGGCGACGACCTGTTC 
GGCCGCACCTTTCCCTTGCACCGGGCGATCGTCGGCGGGCTCGGCGAGCTGCGCGTCGAGGACGCGTTATGG 
CTGGTCAGCGGTCCCGACCTGCCGCGCGGCGCCCTGGTCCGGGTCACCGGCCAGGACGGCGCCCTGCTGCAC 
GTCGAGCCTGCCGCTCCCTGA