ViewGene
Locus Name:
GeneID:
Location:

GeneID:4496
TrivialName: PA14_37580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37580
PAO1 Ortholog Locus:PA2082
Sequence Length:477
Protein Length:158
Start: 3345273
Stop: 3344797
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05470.1|AE004636_1 (AE004636) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 156/158 (98%), Positives = 157/158 (99%)
Sequence:
ATGCCCCTGGACGCCATCGATCTGCGCATTCTCCGTCACCTGCAGCAGGACGGGCGGATGAGCAACCAGGAC
CTGGCGGAGAGGGTTTCCCTCTCGCCATCCGCCTGCCTGCGCCGGCTGCGCCTGCTGGAAAGCGAGGGGATC
ATCCGCGGCTACTCGGTGGAGCTGGATGCCGAGCGTCTGGGCGTGGAGCTGGAAGCCATCGTCCATGTGTCG
CTGCGCCAGGACGTCGAGGGTTGGCACGAGGCGTTCATCGCCAGGGTCCGGGACTGGCCGGAGGTGGTCACC
GCCTATGTGGTGACCGGCGCCACCAACTATGTGCTACGGGTCCGGGCGCGCAACCTCAAGCACTATTCGGAC
TTCATCGTGAACAAACTGAACCGCGCCGCCGGCGTCACCGATATCCGCTCGGAAATCGTCCTGCAGGAGATC
AAGGCCGGTGCCGACCTGCTCGACCTGGTGAACCTGAAGAGTTGA
Translation:
MPLDAIDLRILRHLQQDGRMSNQDLAERVSLSPSACLRRLRLLESEGIIRGYSVELDAERLGVELEAIVHVS
LRQDVEGWHEAFIARVRDWPEVVTAYVVTGATNYVLRVRARNLKHYSDFIVNKLNRAAGVTDIRSEIVLQEI
KAGADLLDLVNLKS*
AnnotationID:4502GeneID:4496
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:30
Gene Name:
Confidence Code:3
GeneProduct:putative leucine-responsive regulatory protein
Cell Localization:()
Synonyms:lrp
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative transcriptional regulator asnC family
Functional Category Confidence Code:5
COGs:COG1522,smart00344
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14291.1| (AL646060) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 176

 Score =  189 bits (479), Expect = 6e-48
 Identities = 91/145 (62%), Positives = 113/145 (77%)

>emb|CAE30743.1| (BX640437) leucine-responsive regulatory protein [Bordetella
           bronchiseptica]
          Length = 177

 Score =  167 bits (423), Expect = 2e-41
 Identities = 86/145 (59%), Positives = 110/145 (75%)

>gb|AAM39476.1| (AE012111) transcriptional regulator asnC family [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 160

 Score =  132 bits (332), Expect = 7e-31
 Identities = 70/144 (48%), Positives = 96/144 (66%)








 
Structural Features:
COG1522, Lrp, Transcriptional regulators [Transcription]
CD-Length = 154 residues,  93.5% aligned
Score =  124 bits (311), Expect = 6e-30
Identities = 66/145 (45%), Positives = 89/145 (61%), Gaps = 1/145 (0%)

smart00344, HTH_ASNC, helix_turn_helix ASNC type; AsnC: 
an autogenously regulated activator of asparagine 
synthetase A transcription in Escherichia coli)
CD-Length = 104 residues, 100.0% aligned
Score =  101 bits (254), Expect = 3e-23
Identities = 45/106 (42%), Positives = 69/106 (65%), Gaps = 2/106 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8993




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26135




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32625




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4496_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4496
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6842
                           PA2082_tr
                           translation of PA2082
                           158
                           98.73
                           99.36
                           0
                           775.0
     

     
     
183032
                           gb|AAG05470.1|AE004636_1
                           (AE004636) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           158
                           98.73
                           99.36
                           0
                           775.0
     

     
     
183033
                           emb|CAD14291.1|
                           (AL646060) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           180
                           52.22
                           66.11
                           26
                           471.0
     

     
     
183034
                           emb|CAE30743.1|
                           (BX640437) leucine-responsive regulatory protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           177
                           50.28
                           64.40
                           19
                           418.0
     

     
     
183036
                           emb|CAE39982.1|
                           (BX640423) leucine-responsive regulatory protein [Bordetella parapertussis]
                           187
                           47.59
                           60.96
                           29
                           418.0
     

     






      

          
GC ORFID: 47498How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2082Glimmer Score: 

          
Start: 1608641Stop: 1609117

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2082 translation of PA2082Homolog Bit Score 303.0

          
Other Homologs:  t_PA4508 (ORF: BLASTX 124.0), t_PA2246 (ORF: BLASTX 105.0), t_PA2082 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCTGGACGCCATCGATCTGCGCATTCTCCGTCACCTGCAGCAGGACGGGCGGATGAGCAACCAGGAC 
CTGGCGGAGAGGGTTTCCCTCTCGCCATCCGCCTGCCTGCGCCGGCTGCGCCTGCTGGAAAGCGAGGGGATC 
ATCCGCGGCTACTCGGTGGAGCTGGATGCCGAGCGTCTGGGCGTGGAGCTGGAAGCCATCGTCCATGTGTCG 
CTGCGCCAGGACGTCGAGGGTTGGCACGAGGCGTTCATCGCCAGGGTCCGGGACTGGCCGGAGGTGGTCACC 
GCCTATGTGGTGACCGGCGCCACCAACTATGTGCTACGGGTCCGGGCGCGCAACCTCAAGCACTATTCGGAC 
TTCATCGTGAACAAACTGAACCGCGCCGCCGGCGTCACCGATATCCGCTCGGAAATCGTCCTGCAGGAGATC 
AAGGCCGGTGCCGACCTGCTCGACCTGGTGAACCTGAAGAGTTGA