ViewGene
Locus Name:
GeneID:
Location:

GeneID:4489
TrivialName: PA14_32340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32340
PAO1 Ortholog Locus:PA2499
Sequence Length:456
Protein Length:151
Start: 2810350
Stop: 2809895
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05887.1|AE004677_4 (AE004677) probable deaminase [Pseudomonas aeruginosa PAO1]
Identities = 149/151 (98%), Positives = 149/151 (98%)
Sequence:
ATGTCCGATGAAACCTTCATGCGCGAGGCCATCGCCCTCGCCCGCGCCAACGTCGAGGCCGGCGGCCGCCCG
TTCGGCGCCGTGCTGGTGCGCGACGGGCGGGTCCTGGCCCGCGGCGTCAACCAGATCCACGAGACCCACGAC
CCCAGCGCCCACGCCGAGCTGCAGGCGATCCGCCAGGCCAGCCAGGCGCTCGGCAGCCCGCACCTGGACGGT
TGCGTGATCTACGCCAGCGGCCATCCCTGCCCGATGTGCCTGGCCGCCATGCATCTCTGCGGCATCCAGGCG
GCCTGGTTCGCCTATTCCAACGAGGACGGCGAAGCGTTCGGCCTGTCCACGGCCACGCTCTACGCCGAGATG
GCGCGCCCGCCACAGCGGCAGAGCCTGCCGCTACGCGCCCTGCGTCCTGCCGGCGAAGAGGGTCTGTACCGG
CAATGGCGGCAAGGCCAGGCATGA
Translation:
MSDETFMREAIALARANVEAGGRPFGAVLVRDGRVLARGVNQIHETHDPSAHAELQAIRQASQALGSPHLDG
CVIYASGHPCPMCLAAMHLCGIQAAWFAYSNEDGEAFGLSTATLYAEMARPPQRQSLPLRALRPAGEEGLYR
QWRQGQA*
AnnotationID:4495GeneID:4489
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 16:04:12
Gene Name:
Confidence Code:3
GeneProduct:putative deaminase
Cell Localization:()
Synonyms:PA2499
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0590
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM06774.1| (AE011047) cytidine/deoxycytidylate deaminase family protein
           [Methanosarcina acetivorans str. C2A] [Methanosarcina
           acetivorans C2A]
          Length = 162

 Score =  122 bits (307), Expect = 5e-28
 Identities = 58/144 (40%), Positives = 89/144 (61%)

>emb|CAA05596.1| (AJ002571) YkoA [Bacillus subtilis]
          Length = 156

 Score =  119 bits (297), Expect = 7e-27
 Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 1/148 (0%)

>emb|CAB13174.1| (Z99110) guanine deaminase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 156

 Score =  119 bits (297), Expect = 7e-27
 Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 1/148 (0%)






 
Structural Features:
COG0590, CumB, Cytosine/adenosine deaminases 
[Nucleotide transport and metabolism / 
Translation, ribosomal structure and biogenesis]
CD-Length = 152 residues,  96.7% aligned
Score =  133 bits (336), Expect = 9e-33
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 3/149 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8979




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26121




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33048




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4489_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4489
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6835
                           PA2499_tr
                           translation of PA2499
                           151
                           98.67
                           98.67
                           0
                           779.0
     

     
     
182941
                           gb|AAG05887.1|AE004677_4
                           (AE004677) probable deaminase [Pseudomonas aeruginosa PAO1]
                           151
                           98.67
                           98.67
                           0
                           779.0
     

     
     
182942
                           emb|CAE31660.1|
                           (BX640440) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           169
                           53.84
                           66.27
                           18
                           452.0
     

     
     
182943
                           emb|CAE40360.1|
                           (BX640425) conserved hypothetical protein [Bordetella parapertussis]
                           169
                           53.84
                           66.27
                           18
                           452.0
     

     
     
182944
                           emb|CAE43152.1|
                           (BX640419) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           169
                           52.66
                           65.08
                           18
                           444.0
     

     






      

          
GC ORFID: 47491How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2499Glimmer Score: 

          
Start: 2143574Stop: 2144029

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2499 translation of PA2499Homolog Bit Score 304.0

          
Other Homologs:  t_PA2499 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGATGAAACCTTCATGCGCGAGGCCATCGCCCTCGCCCGCGCCAACGTCGAGGCCGGCGGCCGCCCG 
TTCGGCGCCGTGCTGGTGCGCGACGGGCGGGTCCTGGCCCGCGGCGTCAACCAGATCCACGAGACCCACGAC 
CCCAGCGCCCACGCCGAGCTGCAGGCGATCCGCCAGGCCAGCCAGGCGCTCGGCAGCCCGCACCTGGACGGT 
TGCGTGATCTACGCCAGCGGCCATCCCTGCCCGATGTGCCTGGCCGCCATGCATCTCTGCGGCATCCAGGCG 
GCCTGGTTCGCCTATTCCAACGAGGACGGCGAAGCGTTCGGCCTGTCCACGGCCACGCTCTACGCCGAGATG 
GCGCGCCCGCCACAGCGGCAGAGCCTGCCGCTACGCGCCCTGCGTCCTGCCGGCGAAGAGGGTCTGTACCGG 
CAATGGCGGCAAGGCCAGGCATGA