ViewGene

Locus Name:
GeneID:
Location:

GeneID:4481
TrivialName: PA14_51060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51060
PAO1 Ortholog Locus:PA1026
Sequence Length:477
Protein Length:158
Start: 4536881
Stop: 4537357
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04415.1|AE004535_2 (AE004535) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/158 (99%), Positives = 158/158 (100%)
Sequence:
ATGGACAAGAAAAAGCTGTTGCGCCTGATCACGGAAAAGCTCGCCGCGGACCTGGAAGTCGCCGTCCGCGCC
GCGCAGACCGCCCATGAGACGGCAACCCACGAAGAGAACGTCGCCGAGAACAAGTACGACACCCTCGGCCTG
GAGGCGGCCTACCTGGCCGCCGGGCAGTCGCGCCGGGTCGAGGAGATCCGCCAGGCGCTGGGCCTGTACCGC
AATCTGGTGCTGCGCGATTTCGACGAGGAACAGGGCATCCAGCTCACCGCGCTGGTCACCCTGCTGAACGCC
GACGGCAGCCGGCGAACAGTGTTCCTCGGCCCCGAGGCGGCCGGGCTGAAGATCGATTGCGAAGGTCGCGAG
GTGTTGGTCATCACGCCTCGCTCGCCACTGGGTCAGAGCCTGGTCGGCAGGCACCCGGGCGACGAGACCGGG
GCGAAGGACTCCCCCCTTGCGGTGGAAATCCTCGCCGTCGACTGA
Translation:
MDKKKLLRLITEKLAADLEVAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAAGQSRRVEEIRQALGLYR
NLVLRDFDEEQGIQLTALVTLLNADGSRRTVFLGPEAAGLKIDCEGREVLVITPRSPLGQSLVGRHPGDETG
AKDSPLAVEILAVD*
AnnotationID:4487GeneID:4481
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1026
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8963
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26105
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4481

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6825 PA1026_tr translation of PA1026 158 99.36 99.99 0 780.0
182643 gb|AAG04415.1|AE004535_2 (AE004535) hypothetical protein PA1026 [Pseudomonas aeruginosa PAO1] 158 99.36 99.99 0 780.0
182645 gb|AAN67473.1|AE016374_5 (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440] 160 58.75 71.87 6 429.0
182644 gb|AAO55282.1| (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 169 54.43 68.04 20 433.0
182646 gb|AAR33505.1| (AE017207) conserved hypothetical protein [Geobacter sulfurreducens PCA] 160 45.62 62.50 2 326.0
GC ORFID: 47483How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1026Glimmer Score:
Start: 417027Stop: 416551
Length: 477
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1026 translation of PA1026Homolog Bit Score 305.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7677 (ORF: BLASTX 165.0), t_PA1026 (ORF: GLIMMER)
GC ORF Sequence
ATGGACAAGAAAAAGCTGTTGCGCCTGATCACGGAAAAGCTCGCCGCGGACCTGGAAGTCGCCGTCCGCGCC
GCGCAGACCGCCCATGAGACGGCAACCCACGAAGAGAACGTCGCCGAGAACAAGTACGACACCCTCGGCCTG
GAGGCGGCCTACCTGGCCGCCGGGCAGTCGCGCCGGGTCGAGGAGATCCGCCAGGCGCTGGGCCTGTACCGC
AATCTGGTGCTGCGCGATTTCGACGAGGAACAGGGCATCCAGCTCACCGCGCTGGTCACCCTGCTGAACGCC
GACGGCAGCCGGCGAACAGTGTTCCTCGGCCCCGAGGCGGCCGGGCTGAAGATCGATTGCGAAGGTCGCGAG
GTGTTGGTCATCACGCCTCGCTCGCCACTGGGTCAGAGCCTGGTCGGCAGGCACCCGGGCGACGAGACCGGG
GCGAAGGACTCCCCCCTTGCGGTGGAAATCCTCGCCGTCGACTGA