ViewGene
Locus Name:
GeneID:
Location:

GeneID:4481
TrivialName: PA14_51060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51060
PAO1 Ortholog Locus:PA1026
Sequence Length:477
Protein Length:158
Start: 4536881
Stop: 4537357
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04415.1|AE004535_2 (AE004535) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/158 (99%), Positives = 158/158 (100%)
Sequence:
ATGGACAAGAAAAAGCTGTTGCGCCTGATCACGGAAAAGCTCGCCGCGGACCTGGAAGTCGCCGTCCGCGCC
GCGCAGACCGCCCATGAGACGGCAACCCACGAAGAGAACGTCGCCGAGAACAAGTACGACACCCTCGGCCTG
GAGGCGGCCTACCTGGCCGCCGGGCAGTCGCGCCGGGTCGAGGAGATCCGCCAGGCGCTGGGCCTGTACCGC
AATCTGGTGCTGCGCGATTTCGACGAGGAACAGGGCATCCAGCTCACCGCGCTGGTCACCCTGCTGAACGCC
GACGGCAGCCGGCGAACAGTGTTCCTCGGCCCCGAGGCGGCCGGGCTGAAGATCGATTGCGAAGGTCGCGAG
GTGTTGGTCATCACGCCTCGCTCGCCACTGGGTCAGAGCCTGGTCGGCAGGCACCCGGGCGACGAGACCGGG
GCGAAGGACTCCCCCCTTGCGGTGGAAATCCTCGCCGTCGACTGA
Translation:
MDKKKLLRLITEKLAADLEVAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAAGQSRRVEEIRQALGLYR
NLVLRDFDEEQGIQLTALVTLLNADGSRRTVFLGPEAAGLKIDCEGREVLVITPRSPLGQSLVGRHPGDETG
AKDSPLAVEILAVD*
AnnotationID:4487GeneID:4481
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1026
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8963




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26105




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4481
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6825
                           PA1026_tr
                           translation of PA1026
                           158
                           99.36
                           99.99
                           0
                           780.0
     

     
     
182643
                           gb|AAG04415.1|AE004535_2
                           (AE004535) hypothetical protein PA1026 [Pseudomonas aeruginosa PAO1]
                           158
                           99.36
                           99.99
                           0
                           780.0
     

     
     
182645
                           gb|AAN67473.1|AE016374_5
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           160
                           58.75
                           71.87
                           6
                           429.0
     

     
     
182644
                           gb|AAO55282.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           169
                           54.43
                           68.04
                           20
                           433.0
     

     
     
182646
                           gb|AAR33505.1|
                           (AE017207) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           160
                           45.62
                           62.50
                           2
                           326.0
     

     






      

          
GC ORFID: 47483How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1026Glimmer Score: 

          
Start: 417027Stop: 416551

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1026 translation of PA1026Homolog Bit Score 305.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7677 (ORF: BLASTX 165.0), t_PA1026 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAGAAAAAGCTGTTGCGCCTGATCACGGAAAAGCTCGCCGCGGACCTGGAAGTCGCCGTCCGCGCC 
GCGCAGACCGCCCATGAGACGGCAACCCACGAAGAGAACGTCGCCGAGAACAAGTACGACACCCTCGGCCTG 
GAGGCGGCCTACCTGGCCGCCGGGCAGTCGCGCCGGGTCGAGGAGATCCGCCAGGCGCTGGGCCTGTACCGC 
AATCTGGTGCTGCGCGATTTCGACGAGGAACAGGGCATCCAGCTCACCGCGCTGGTCACCCTGCTGAACGCC 
GACGGCAGCCGGCGAACAGTGTTCCTCGGCCCCGAGGCGGCCGGGCTGAAGATCGATTGCGAAGGTCGCGAG 
GTGTTGGTCATCACGCCTCGCTCGCCACTGGGTCAGAGCCTGGTCGGCAGGCACCCGGGCGACGAGACCGGG 
GCGAAGGACTCCCCCCTTGCGGTGGAAATCCTCGCCGTCGACTGA