ViewGene
Locus Name:
GeneID:
Location:

GeneID:4461
TrivialName: PA14_07750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07750
PAO1 Ortholog Locus:
Sequence Length:984
Protein Length:327
Start: 664339
Stop: 665322
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA17513.1| (AL021958) PE_PGRS [Mycobacterium tuberculosis H37Rv]
Identities = 80/288 (27%), Positives = 98/288 (34%), Gaps = 36/288 (12%)
Sequence:
CTGGTAGGCGGTTTCCAGGGCCACCTGCAGGCTGCCGCTATCGATGCGGCCGCTTCCGGCCAGGTCGAGGGC
GGTACCGTGGTCGACAGAGGTGCGGATGATCGGCAGGCCGAGGGTCACGTTCACGGCGGCACCGAAGCCCTT
GTACTTGAGCACGGGGAGACCCTGGTCGTGGTACATCGCCAGCACCGCGTCGCAATGCTCCAGGTGCTTGGG
AGTGAACAGGGTGTCGGCCGGCAGCGGGCCGATCAGGTCGAGGCCTTCGCCACGCAGGCGCTCGAGGCAGGG
TTCGATCACCTCGATCTCTTCCCGCCCCAGGTGACCGCCTTCGCCGGCGTGCGGGTTGAGTCCGCAGACCAG
GATGCGCGGATGGGCGATGCCGAACTTGTCGCGCAGGTCGGCGTGGAGGATGCGCGCGACCCGGGCCAGGCG
CTCGTCGCTAATGGCGTCGGCGACCTCGCGCAGCGGCAGGTGGGTGGTCGCCAGGGCCACGCGCAGGCCGCG
GGTGGCCAGCATCATCACCACCTGGGCGGTGTGGGTGAGGTCGGCGAGGAATTCGGTATGGCCGGAAAAGGG
GATGCCGGCTTCGTTGATCACGCCCTTGTGCACCGGTGCGGTGATCATCCCGGCGAAGTGCCCGTCGAGGCA
GCCCTGGCCGGCGCGGGTCAGGGTTTCCAGGACGTAGGCGGCGTTGGCGCGGTCCAATTGCCCGGGGCGGAC
CGGGGCGGCCAGCGGCGTATCCCATACGTACAGTTGGCCGGCCTTGGCCGGTCGCTCTGGCCAGGCGGCCGG
GGAAACGTCCTTAAGGTAGATCGCCAGGCCCAGTTGGCCGGCGCGCTCTTGCAGGAGCGTGCGGCTGGCGAT
GGCGATCAGGGGGTGGGGCTGGGCGGAGCGGGCGAGCAGCAGGCACAGATCGGGTCCGATACCTGCCGGCTC
GCCGGGAGTGAGCGCGAAGCGCAGGCTCACTGCTTGATTTCCACGTAG
Translation:
MVGGFQGHLQAAAIDAAASGQVEGGTVVDRGADDRQAEGHVHGGTEALVLEHGETLVVVHRQHRVAMLQVLG
SEQGVGRQRADQVEAFATQALEAGFDHLDLFPPQVTAFAGVRVESADQDARMGDAELVAQVGVEDARDPGQA
LVANGVGDLAQRQVGGRQGHAQAAGGQHHHHLGGVGEVGEEFGMAGKGDAGFVDHALVHRCGDHPGEVPVEA
ALAGAGQGFQDVGGVGAVQLPGADRGGQRRIPYVQLAGLGRSLWPGGRGNVLKVDRQAQLAGALLQERAAGD
GDQGVGLGGAGEQQAQIGSDTCRLAGSEREAQAHCLIST*
AnnotationID:4467GeneID:4461
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 09:09:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15092




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26065




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 47463How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold6_revised_gene668Glimmer Score: 

          
Start: 6465682Stop: 6466665

          
Length: 984


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold6_revised_gene6680Homolog Bit Score 308.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGGTAGGCGGTTTCCAGGGCCACCTGCAGGCTGCCGCTATCGATGCGGCCGCTTCCGGCCAGGTCGAGGGC 
GGTACCGTGGTCGACAGAGGTGCGGATGATCGGCAGGCCGAGGGTCACGTTCACGGCGGCACCGAAGCCCTT 
GTACTTGAGCACGGGGAGACCCTGGTCGTGGTACATCGCCAGCACCGCGTCGCAATGCTCCAGGTGCTTGGG 
AGTGAACAGGGTGTCGGCCGGCAGCGGGCCGATCAGGTCGAGGCCTTCGCCACGCAGGCGCTCGAGGCAGGG 
TTCGATCACCTCGATCTCTTCCCGCCCCAGGTGACCGCCTTCGCCGGCGTGCGGGTTGAGTCCGCAGACCAG 
GATGCGCGGATGGGCGATGCCGAACTTGTCGCGCAGGTCGGCGTGGAGGATGCGCGCGACCCGGGCCAGGCG 
CTCGTCGCTAATGGCGTCGGCGACCTCGCGCAGCGGCAGGTGGGTGGTCGCCAGGGCCACGCGCAGGCCGCG 
GGTGGCCAGCATCATCACCACCTGGGCGGTGTGGGTGAGGTCGGCGAGGAATTCGGTATGGCCGGAAAAGGG 
GATGCCGGCTTCGTTGATCACGCCCTTGTGCACCGGTGCGGTGATCATCCCGGCGAAGTGCCCGTCGAGGCA 
GCCCTGGCCGGCGCGGGTCAGGGTTTCCAGGACGTAGGCGGCGTTGGCGCGGTCCAATTGCCCGGGGCGGAC 
CGGGGCGGCCAGCGGCGTATCCCATACGTACAGTTGGCCGGCCTTGGCCGGTCGCTCTGGCCAGGCGGCCGG 
GGAAACGTCCTTAAGGTAGATCGCCAGGCCCAGTTGGCCGGCGCGCTCTTGCAGGAGCGTGCGGCTGGCGAT 
GGCGATCAGGGGGTGGGGCTGGGCGGAGCGGGCGAGCAGCAGGCACAGATCGGGTCCGATACCTGCCGGCTC 
GCCGGGAGTGAGCGCGAAGCGCAGGCTCACTGCTTGATTTCCACGTAG