ViewGene
Locus Name:
GeneID:
Location:

GeneID:4460
TrivialName: PA14_47020
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 21:09:53
LocusName:PA14_47020
PAO1 Ortholog Locus:
Sequence Length:624
Protein Length:207
Start: 4189862
Stop: 4189239
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO58616.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 140/197 (71%), Positives = 163/197 (82%)
Sequence:
ATGAGCACCGAGGATTTCGACGCGATCACCGCCACCACCCTGGCCGACTATCAGCGCAACGCCGAAGGCTTC
CGCGAGGGCACCCGCGGCCATGACGTGAGCCAGAACGTCGAGGCGCTGCTGCGCCATATCGACGGGCCGCCG
CCGTACCGGATCCTCGATTTCGGCTGCGGTCCCGGGCGCGACCTGGCCACCTTCCGCCGCCTCGGCCACCAG
CCGGTGGGACTCGAAGGCACGCCGCGCTTCGTCGAGATGGCCAGGGCCGACAGCGGTTGCGAGGTATGGCAA
CAGAATTTCCTGGCGCTGCGACTGCCGGCTGGGCACTTCGACGGCATCTTCGCCAACGCCAGCCTGTTCCAT
GTGCCCGGCAGCGCCTTGCCGCGGGTGCTCGGCGAACTCTTCGAAGCGCTGCGGCCGGGCGGCGTGCTGTTC
AGCTCCAACCCGCGCGGCGACAACCGCGAGGGCTGGAATGGCCAACGCTACGGTGCCTACCACGATTACCCG
GCCTGGAAACGCCTGCTGGAGGAAGCCGGTTTCGTCGAGCTGGAGCACTACTACCGGCCGCCGGGCCTGCCG
CGCGAGCAGCAGCCCTGGCTGGCGAGCGTCTGGCGGCGCCCCGTCTGA
Translation:
MSTEDFDAITATTLADYQRNAEGFREGTRGHDVSQNVEALLRHIDGPPPYRILDFGCGPGRDLATFRRLGHQ
PVGLEGTPRFVEMARADSGCEVWQQNFLALRLPAGHFDGIFANASLFHVPGSALPRVLGELFEALRPGGVLF
SSNPRGDNREGWNGQRYGAYHDYPAWKRLLEEAGFVELEHYYRPPGLPREQQPWLASVWRRPV*
AnnotationID:4466GeneID:4460
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 21:09:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8921




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26063




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37442




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4460_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4460
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
182189
                           gb|AAO58616.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           209
                           66.98
                           78.94
                           4
                           785.0
     

     
     
182190
                           emb|CAE32929.1|
                           (BX640444) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           209
                           66.98
                           74.16
                           4
                           757.0
     

     
     
182191
                           emb|CAE36671.1|
                           (BX640427) conserved hypothetical protein [Bordetella parapertussis]
                           209
                           66.98
                           74.16
                           4
                           757.0
     

     






      

          
GC ORFID: 47462How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene3836Glimmer Score: 

          
Start: 764047Stop: 764670

          
Length: 624


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3836 related to: gi|16126168|ref|NP_420732.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus] gb|AAK23900.1| (AE005866) conserved hypothetical protein [Caulobacter crescentus] [Caulobacter vibrioides]Homolog Bit Score 308.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3836 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACCGAGGATTTCGACGCGATCACCGCCACCACCCTGGCCGACTATCAGCGCAACGCCGAAGGCTTC 
CGCGAGGGCACCCGCGGCCATGACGTGAGCCAGAACGTCGAGGCGCTGCTGCGCCATATCGACGGGCCGCCG 
CCGTACCGGATCCTCGATTTCGGCTGCGGTCCCGGGCGCGACCTGGCCACCTTCCGCCGCCTCGGCCACCAG 
CCGGTGGGACTCGAAGGCACGCCGCGCTTCGTCGAGATGGCCAGGGCCGACAGCGGTTGCGAGGTATGGCAA 
CAGAATTTCCTGGCGCTGCGACTGCCGGCTGGGCACTTCGACGGCATCTTCGCCAACGCCAGCCTGTTCCAT 
GTGCCCGGCAGCGCCTTGCCGCGGGTGCTCGGCGAACTCTTCGAAGCGCTGCGGCCGGGCGGCGTGCTGTTC 
AGCTCCAACCCGCGCGGCGACAACCGCGAGGGCTGGAATGGCCAACGCTACGGTGCCTACCACGATTACCCG 
GCCTGGAAACGCCTGCTGGAGGAAGCCGGTTTCGTCGAGCTGGAGCACTACTACCGGCCGCCGGGCCTGCCG 
CGCGAGCAGCAGCCCTGGCTGGCGAGCGTCTGGCGGCGCCCCGTCTGA