ViewGene
Locus Name:
GeneID:
Location:

GeneID:4458
TrivialName: PA14_57130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57130
PAO1 Ortholog Locus:PA4395
Sequence Length:480
Protein Length:159
Start: 5089351
Stop: 5088872
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07783.1|AE004855_5 (AE004855) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 158/159 (99%), Positives = 159/159 (100%)
Sequence:
ATGCCTTCGTTCGACGTGGTGTCCGAACTGGACAAACACGAGTTGACCAACGCCGTGGACAACGCCATCAAG
GAACTGGATCGCCGTTTCGACCTGAAAGGCAAATGCAGTTTCGAAGCCAAGGACAAGTCGGTGACCCTCACC
GCCGAAGCCGATTTCATGCTCGAGCAGATGCTCGACATCCTGCGTTCCAACCTGGTCAAGCGCAAGGTCGAC
AGCCAGTGCATGGAGATCAAGGATGCCTACCCGTCGGGCAAGGTGGTCAAGCAGGAAGTGAACTTCCGCGAG
GGCATCGACAAGGACCTGGCGAAGAAGATCGTCGGCCTGATCAAGGAGCGCAAGCTCAAGGTCCAGGCCGCC
ATCCAGGGCGAGCAGGTGCGCGTCACCGGCAAGAAGCGCGACGATCTGCAGGAGGCCATCGCCCTGCTGCGC
GGCGAATCCCTCGGCATGCCGCTGCAGTTCACCAACTTCCGCGATTGA
Translation:
MPSFDVVSELDKHELTNAVDNAIKELDRRFDLKGKCSFEAKDKSVTLTAEADFMLEQMLDILRSNLVKRKVD
SQCMEIKDAYPSGKVVKQEVNFREGIDKDLAKKIVGLIKERKLKVQAAIQGEQVRVTGKKRDDLQEAIALLR
GESLGMPLQFTNFRD*
AnnotationID:4464GeneID:4458
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 13:01:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4395
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:27252




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4458_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4458
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6801
                           PA4395_tr
                           translation of PA4395
                           159
                           99.37
                           99.99
                           0
                           789.0
     

     
     
182116
                           gb|AAG07783.1|AE004855_5
                           (AE004855) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           159
                           99.37
                           99.99
                           0
                           789.0
     

     
     
182118
                           gb|AAN66975.1|AE016326_1
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           161
                           76.39
                           83.22
                           2
                           594.0
     

     
     
182117
                           gb|AAO57842.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           159
                           76.10
                           86.79
                           0
                           613.0
     

     
     
182119
                           gb|AAO11002.1|AE016805_259
                           (AE016805) Uncharacterized protein conserved in bacteria [Vibrio vulnificus CMCP6]
                           160
                           57.50
                           73.75
                           1
                           447.0
     

     






      

          
GC ORFID: 47460How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4395Glimmer Score: 

          
Start: 4353027Stop: 4352548

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4395 translation of PA4395Homolog Bit Score 308.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1141 (ORF: BLASTX 243.0), t_PA4395 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTTCGTTCGACGTGGTGTCCGAACTGGACAAACACGAGTTGACCAACGCCGTGGACAACGCCATCAAG 
GAACTGGATCGCCGTTTCGACCTGAAAGGCAAATGCAGTTTCGAAGCCAAGGACAAGTCGGTGACCCTCACC 
GCCGAAGCCGATTTCATGCTCGAGCAGATGCTCGACATCCTGCGTTCCAACCTGGTCAAGCGCAAGGTCGAC 
AGCCAGTGCATGGAGATCAAGGATGCCTACCCGTCGGGCAAGGTGGTCAAGCAGGAAGTGAACTTCCGCGAG 
GGCATCGACAAGGACCTGGCGAAGAAGATCGTCGGCCTGATCAAGGAGCGCAAGCTCAAGGTCCAGGCCGCC 
ATCCAGGGCGAGCAGGTGCGCGTCACCGGCAAGAAGCGCGACGATCTGCAGGAGGCCATCGCCCTGCTGCGC 
GGCGAATCCCTCGGCATGCCGCTGCAGTTCACCAACTTCCGCGATTGA