ViewGene
Locus Name:
GeneID:
Location:

GeneID:4425
TrivialName: PA14_22610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22610
PAO1 Ortholog Locus:PA3218
Sequence Length:474
Protein Length:157
Start: 1966329
Stop: 1965856
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06606.1|AE004745_3 (AE004745) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/157 (98%), Positives = 156/157 (99%)
Sequence:
ATGGAACAGTTCGGTATCGACGCCCTTGCGCCACAGCCGCAGGTGCTGGAAGCGCCAGGCGCAGAACTCGTC
GCGCAGGCGCGGGGTGCTCACCAGCACCGCCCGGCTCGGCCGATGGAAGGCGCGCAGGAAGGCATAGCCCCA
GGACAGCGGCAGCCACGGACAGCGGTCACGCAGGTATTCGGGAAAACGCGTATGGATCGCCGAGGTGAAGTC
CAGGCCGCGCTTGCCCAGCCAGCGCCGCGCGGCCCAGCCGAGCGGCCCCTCGGTGGCCAGGTGCACGGCATC
CGGGGCGAAGGCCTCGATCAGCCCGCCGAGGCGCCAGAGATTCCAGGCCAGGGGGATTTCCGGATAGCTGGG
ACAGGGCAGGCAGCGAAAGTCGGCGGGCGACAGCACCCGTACCTGGTGGCCCAGCAGTTCCAGCTCGCGCTG
CAGGGCCAGCAGGCTGGTGACGACTCCGTTGACTTGCGGTAA
Translation:
MEQFGIDALAPQPQVLEAPGAELVAQARGAHQHRPARPMEGAQEGIAPGQRQPRTAVTQVFGKTRMDRRGEV
QAALAQPAPRGPAERPLGGQVHGIRGEGLDQPAEAPEIPGQGDFRIAGTGQAAKVGGRQHPYLVAQQFQLAL
QGQQAGDDSVDLR*
AnnotationID:4431GeneID:4425
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 10:10:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3218
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8851




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25994




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4425
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6766
                           PA3218_tr
                           translation of PA3218
                           157
                           98.08
                           99.36
                           0
                           803.0
     

     
     
181233
                           gb|AAG06606.1|AE004745_3
                           (AE004745) hypothetical protein PA3218 [Pseudomonas aeruginosa PAO1]
                           157
                           98.08
                           99.36
                           0
                           803.0
     

     






      

          
GC ORFID: 47427How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3218Glimmer Score: 

          
Start: 2987602Stop: 2988075

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3218 translation of PA3218Homolog Bit Score 313.0

          
Other Homologs:  t_PA3218 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACAGTTCGGTATCGACGCCCTTGCGCCACAGCCGCAGGTGCTGGAAGCGCCAGGCGCAGAACTCGTC 
GCGCAGGCGCGGGGTGCTCACCAGCACCGCCCGGCTCGGCCGATGGAAGGCGCGCAGGAAGGCATAGCCCCA 
GGACAGCGGCAGCCACGGACAGCGGTCACGCAGGTATTCGGGAAAACGCGTATGGATCGCCGAGGTGAAGTC 
CAGGCCGCGCTTGCCCAGCCAGCGCCGCGCGGCCCAGCCGAGCGGCCCCTCGGTGGCCAGGTGCACGGCATC 
CGGGGCGAAGGCCTCGATCAGCCCGCCGAGGCGCCAGAGATTCCAGGCCAGGGGGATTTCCGGATAGCTGGG 
ACAGGGCAGGCAGCGAAAGTCGGCGGGCGACAGCACCCGTACCTGGTGGCCCAGCAGTTCCAGCTCGCGCTG 
CAGGGCCAGCAGGCTGGTGACGACTCCGTTGACTTGCGGTAA