ViewGene
Locus Name:
GeneID:
Location:

GeneID:4413
TrivialName: PA14_14250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14250
PAO1 Ortholog Locus:PA3847
Sequence Length:471
Protein Length:156
Start: 1217711
Stop: 1217241
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07234.1|AE004802_3 (AE004802) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/156 (98%), Positives = 154/156 (98%)
Sequence:
ATGAATATCAGCCTGCATTTCGAATCGCGCCTGCAGGCCAGCCCCGAACAGCTCTGGCGGTGGATCACCTCG
GTGGACGGGATACTCCGCGAGATACGCCCGTTGCTGAGCATGAGCGTACCGCCCGGTATCCGCAGCCTCGAA
GACCTGGAGGTGGTGCCCCGGCGCCCGCTGTTCCGCAGCCACATGCGCCTGTTCGGCTTGCTGCCGCTGGGC
ACTTCGCAACTGACCCTGCTGGAGCTGACGCCCGGCCGCGGCTTCATCGAACAGTCGCCGATGACCGGCATG
CGCCTCTGGCGCCACGAGCGACGCATCCTGCCGGCACCGGGCGAGGCCGGGGAATGCCTGCTGGTCGACCAG
TTGACCGTACGCCCGCTATTCGCCGCCGGGCTGGTACGCTGGTTCCTCACCCGCATCTTCCGGCATCGCCAC
CGGGTGCTCTGCCGGCAGTTCCGCACGGACCGCCGGTGA
Translation:
MNISLHFESRLQASPEQLWRWITSVDGILREIRPLLSMSVPPGIRSLEDLEVVPRRPLFRSHMRLFGLLPLG
TSQLTLLELTPGRGFIEQSPMTGMRLWRHERRILPAPGEAGECLLVDQLTVRPLFAAGLVRWFLTRIFRHRH
RVLCRQFRTDRR*
AnnotationID:4419GeneID:4413
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 22:10:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3847
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8827




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25970




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31715




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4413_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4413
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6751
                           PA3847_tr
                           translation of PA3847
                           156
                           98.71
                           98.71
                           0
                           808.0
     

     
     
180996
                           gb|AAG07234.1|AE004802_3
                           (AE004802) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           156
                           98.71
                           98.71
                           0
                           808.0
     

     






      

          
GC ORFID: 47415How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3847Glimmer Score: 

          
Start: 3736227Stop: 3736697

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3847 translation of PA3847Homolog Bit Score 315.0

          
Other Homologs:  t_PA3847 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATATCAGCCTGCATTTCGAATCGCGCCTGCAGGCCAGCCCCGAACAGCTCTGGCGGTGGATCACCTCG 
GTGGACGGGATACTCCGCGAGATACGCCCGTTGCTGAGCATGAGCGTACCGCCCGGTATCCGCAGCCTCGAA 
GACCTGGAGGTGGTGCCCCGGCGCCCGCTGTTCCGCAGCCACATGCGCCTGTTCGGCTTGCTGCCGCTGGGC 
ACTTCGCAACTGACCCTGCTGGAGCTGACGCCCGGCCGCGGCTTCATCGAACAGTCGCCGATGACCGGCATG 
CGCCTCTGGCGCCACGAGCGACGCATCCTGCCGGCACCGGGCGAGGCCGGGGAATGCCTGCTGGTCGACCAG 
TTGACCGTACGCCCGCTATTCGCCGCCGGGCTGGTACGCTGGTTCCTCACCCGCATCTTCCGGCATCGCCAC 
CGGGTGCTCTGCCGGCAGTTCCGCACGGACCGCCGGTGA