ViewGene
Locus Name:
GeneID:
Location:

GeneID:4344
TrivialName: PA14_47410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47410
PAO1 Ortholog Locus:PA1299
Sequence Length:450
Protein Length:149
Start: 4225284
Stop: 4224835
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04688.1|AE004559_7 (AE004559) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 149/149 (100%), Positives = 149/149 (100%)
Sequence:
ATGGCCGCCAAAGTCGAACCCTTCTGGAAACGCAAGACCCTCGCCCAACTCGACCAGGACGAGTGGGAGTCG
CTGTGCGACGGTTGCGGCTTGTGCTGCCTGCAGAAGCTCGAGGACGAGGACGACGGCAGCGTCTACTACACG
CGTATCGCCTGCAAGCTGCTCGACCTGCAAAGCTGCCGCTGCACCAACTACGCCGAGCGCATCCGTTTCGTC
CCCGACTGCATCCAGCTCACCCCGGCGCAGGCCGACGAGTTCCAGTGGTTGCCGCCGACCTGCGGCTATCGC
CTGGTTGCCGAAGGCAAGGACCTGCCGCTCTGGCACCACCTGGTCTGCGGCGACCCGGAGCGGGTCCACAAG
GAACGCATTTCCCAGTCCGGGCGCATGCTCAGCGAGACCCAGGTGGCCGAGGACGACTGGGAGGACTACCTG
ATCTTCCGCGCCGGCTGA
Translation:
MAAKVEPFWKRKTLAQLDQDEWESLCDGCGLCCLQKLEDEDDGSVYYTRIACKLLDLQSCRCTNYAERIRFV
PDCIQLTPAQADEFQWLPPTCGYRLVAEGKDLPLWHHLVCGDPERVHKERISQSGRMLSETQVAEDDWEDYL
IFRAG*
AnnotationID:4350GeneID:4344
AnnotatorUID: diggins
Modification Date/Time: 2005-01-30 07:07:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:ycgN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN80094.1|AE016759_368 (AE016759) Hypothetical protein ycgN [Escherichia coli CFT073]
          Length = 158

 Score =  164 bits (415), Expect = 1e-40
 Identities = 70/139 (50%), Positives = 94/139 (67%), Gaps = 2/139 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8689




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25832




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37489




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4344_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4344
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6676
                           PA1299_tr
                           translation of PA1299
                           149
                           99.99
                           99.99
                           0
                           830.0
     

     
     
179441
                           gb|AAG04688.1|AE004559_7
                           (AE004559) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           149
                           99.99
                           99.99
                           0
                           830.0
     

     
     
179442
                           gb|AAO57384.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           149
                           83.89
                           89.26
                           0
                           699.0
     

     
     
179443
                           gb|AAN70160.1|AE016655_5
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           150
                           74.66
                           85.33
                           1
                           646.0
     

     
     
179445
                           dbj|BAB49549.1|
                           (AP002999) hypothetical protein [Mesorhizobium loti]
                           151
                           53.64
                           65.56
                           5
                           445.0
     

     






      

          
GC ORFID: 47346How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1299Glimmer Score: 

          
Start: 728625Stop: 729074

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1299 translation of PA1299Homolog Bit Score 324.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1738 (ORF: BLASTX 273.0), t_PA1299 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGCCAAAGTCGAACCCTTCTGGAAACGCAAGACCCTCGCCCAACTCGACCAGGACGAGTGGGAGTCG 
CTGTGCGACGGTTGCGGCTTGTGCTGCCTGCAGAAGCTCGAGGACGAGGACGACGGCAGCGTCTACTACACG 
CGTATCGCCTGCAAGCTGCTCGACCTGCAAAGCTGCCGCTGCACCAACTACGCCGAGCGCATCCGTTTCGTC 
CCCGACTGCATCCAGCTCACCCCGGCGCAGGCCGACGAGTTCCAGTGGTTGCCGCCGACCTGCGGCTATCGC 
CTGGTTGCCGAAGGCAAGGACCTGCCGCTCTGGCACCACCTGGTCTGCGGCGACCCGGAGCGGGTCCACAAG 
GAACGCATTTCCCAGTCCGGGCGCATGCTCAGCGAGACCCAGGTGGCCGAGGACGACTGGGAGGACTACCTG 
ATCTTCCGCGCCGGCTGA