ViewGene
Locus Name:
GeneID:
Location:

GeneID:4295
TrivialName: PA14_12570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12570
PAO1 Ortholog Locus:PA3965
Sequence Length:510
Protein Length:169
Start: 1080027
Stop: 1079518
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07352.1|AE004814_7 (AE004814) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 169/169 (100%), Positives = 169/169 (100%)
Sequence:
ATGGCAATCAACCTGAAAGAAATCCTCGCCATGAACAAACTCGACCGCTACGACCTGCGTATCCTCGAAGAA
CTCCAGCGCGACGCACGCATCTCCAACCAGGAACTGGCAGAACGGATAGGCCTGTCGCCATCGCCCTGTTCG
CGACGGGTCAAGCAGCTCGAGGACGACGGCTACATCGTCCGCCAGGTAGCCTTGCTGGACCGCAAGAAGCTC
GGCCTGAGCCTCACCGCCTTCGTCCTCATAGGCATGGATCGACACACCCCGGAACGCTTCGAACATTTCCAG
GAAGTCATCGGCAAATGCCCGGAAGTGCTGGAGTGCAGCCTGGTCACCGGGATGGACGCGGACTACCAGTTG
AAGGTCGTGGTGCCGGACATGGACCACTACCAGAAGCTCCTGCTGGGTACCCTGACGCGCATCGAGGGGGTC
TCCAGCGTGCGCTCCAGCTTCGTCCTCAACCAGGTGCTGGCGAGTACCGAACTGCCGCTGGAGCACCTGCGC
GATTGA
Translation:
MAINLKEILAMNKLDRYDLRILEELQRDARISNQELAERIGLSPSPCSRRVKQLEDDGYIVRQVALLDRKKL
GLSLTAFVLIGMDRHTPERFEHFQEVIGKCPEVLECSLVTGMDADYQLKVVVPDMDHYQKLLLGTLTRIEGV
SSVRSSFVLNQVLASTELPLEHLRD*
AnnotationID:4301GeneID:4295
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 18:06:10
Gene Name:
Confidence Code:3
GeneProduct:probable AsnC-family transcriptional regulator
Cell Localization:()
Synonyms:PA3965
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11236 COG1522, Lrp, Transcriptional regulators [Transcription]
Length = 154
Score =  135 bits (340), Expect = 7e-33
Identities = 79/154 (51%), Positives = 98/154 (63%), Gaps = 2/154 (1%)






   
Genomic Context:






   
Comment:
Similar to leucine-responsive regulatory protein


















    ReferenceID:8591




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25734




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32264




  
Author/Investigator(s):
        Ito,K.





  
Title:
        Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational
 enhancer element




  
PubMed:
        7678344


MedLine:
        93126364




    
Source:
Proc. Natl. Acad. Sci. U.S.A. 90 (1), 302-306 (1993)






    
Reference Type:Online 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=BAA01880.1









           
Homologs By Global Alignment 

           

       



     
Gene ID:4295
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6607
                           PA3965_tr
                           translation of PA3965
                           169
                           99.99
                           99.99
                           0
                           848.0
     

     
     
178437
                           gb|AAG07352.1|AE004814_7
                           (AE004814) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           169
                           99.99
                           99.99
                           0
                           848.0
     

     
     
178438
                           gb|AAN70346.1|AE016676_6
                           (AE016792) transcriptional regulator, AsnC family [Pseudomonas putida KT2440]
                           169
                           84.02
                           87.57
                           11
                           709.0
     

     
     
178439
                           gb|AAO58223.1|
                           (AE016873) transcriptional regulator, AsnC family [Pseudomonas syringae pv. tomato str. DC3000]
                           169
                           82.84
                           88.75
                           10
                           707.0
     

     
     
6608
                           PA4508_tr
                           translation of PA4508
                           169
                           47.33
                           61.53
                           12
                           367.0
     

     






      

          
GC ORFID: 47297How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3965Glimmer Score: 

          
Start: 3873911Stop: 3874420

          
Length: 510


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3965 translation of PA3965Homolog Bit Score 331.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5719 (ORF: BLASTX 276.0), t_PA4508 (ORF: BLASTX 146.0), psyr_15may02_Scaffold2_revised_gene3172 (ORF: BLASTX 135.0), t_PA2028 (ORF: BLASTX 124.0), t_PA2246 (ORF: BLASTX 120.0), psyr_15may02_Scaffold2_revised_gene3924 (ORF: BLASTX 112.0), t_PA5308 (ORF: BLASTX 107.0), t_PA3965 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAATCAACCTGAAAGAAATCCTCGCCATGAACAAACTCGACCGCTACGACCTGCGTATCCTCGAAGAA 
CTCCAGCGCGACGCACGCATCTCCAACCAGGAACTGGCAGAACGGATAGGCCTGTCGCCATCGCCCTGTTCG 
CGACGGGTCAAGCAGCTCGAGGACGACGGCTACATCGTCCGCCAGGTAGCCTTGCTGGACCGCAAGAAGCTC 
GGCCTGAGCCTCACCGCCTTCGTCCTCATAGGCATGGATCGACACACCCCGGAACGCTTCGAACATTTCCAG 
GAAGTCATCGGCAAATGCCCGGAAGTGCTGGAGTGCAGCCTGGTCACCGGGATGGACGCGGACTACCAGTTG 
AAGGTCGTGGTGCCGGACATGGACCACTACCAGAAGCTCCTGCTGGGTACCCTGACGCGCATCGAGGGGGTC 
TCCAGCGTGCGCTCCAGCTTCGTCCTCAACCAGGTGCTGGCGAGTACCGAACTGCCGCTGGAGCACCTGCGC 
GATTGA