ViewGene
Locus Name:
GeneID:
Location:

GeneID:4280
TrivialName: PA14_21530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21530
PAO1 Ortholog Locus:PA3287
Sequence Length:516
Protein Length:171
Start: 1867277
Stop: 1866762
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06675.1|AE004751_1 (AE004751) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 171/171 (100%), Positives = 171/171 (100%)
Sequence:
ATGACCGATAGCCCTCGCCCAGAACTGGATATGGAAACCCAGGAGTTCGTCCACCAGCTGTTCGACCTGGCC
CGCCAGGGCAACAGCCAGCGCCTCGAGCAACTGCTGCAACAGGGCCTGCCGCCGAACCTGCGCAACCACAAG
GGCGATAGCCTGCTGATGCTGGCCAGCTACCATGGCCACGCCGACACGGTACGCCTGCTGCTGGCCTACAAG
GCCGACCCGGACCTGCGCAACCTGGCCGGGCAGACACCGCTGGCCGGCGCTGCGTTCAAGGGCGACCTGGCG
ATGGTCGAACTGCTCCTCGCCGGCGGCGCCGACGTCGAGGGCGCCTCGGCCGACGGCAAGACCGCACTGATG
ATGGCGGCCATGTTCAACCAGGCCGAGGTCGCCGCCAGCCTGCTGGCCCACGGCGCCCGTCGTGACGCCCAG
GACGCCGCCGGGCTGACGCCGCTGGCGGCGGCGCGGATGATGAATGCCGAGGCCACGGTCGCGCTGCTCAGC
CGGCCCCACTGA
Translation:
MTDSPRPELDMETQEFVHQLFDLARQGNSQRLEQLLQQGLPPNLRNHKGDSLLMLASYHGHADTVRLLLAYK
ADPDLRNLAGQTPLAGAAFKGDLAMVELLLAGGADVEGASADGKTALMMAAMFNQAEVAASLLAHGARRDAQ
DAAGLTPLAAARMMNAEATVALLSRPH*
AnnotationID:4286GeneID:4280
AnnotatorUID: diggins
Modification Date/Time: 2005-09-12 21:09:59
Gene Name:
Confidence Code:3
GeneProduct:putative ankyrin domain protein
Cell Localization:()
Synonyms:PA3287
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00204
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55569.1| (AE016863) ankyrin domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 181

 Score =  193 bits (490), Expect = 4e-49
 Identities = 101/173 (58%), Positives = 129/173 (74%), Gaps = 4/173 (2%)

>gb|AAN67453.1|AE016372_8 (AE016780) ankyrin domain protein [Pseudomonas putida KT2440]
          Length = 174

 Score =  176 bits (447), Expect = 4e-44
 Identities = 94/164 (57%), Positives = 115/164 (70%)

>gb|AAF12383.1|AE001863_8 (AE001863) ankyrin-related protein [Deinococcus radiodurans]
          Length = 180

 Score =  156 bits (395), Expect = 4e-38
 Identities = 86/168 (51%), Positives = 109/168 (64%), Gaps = 1/168 (0%)








 
Structural Features:
cd00204, ANK, ankyrin repeats
CD-Length = 126 residues,  99.2% aligned
Score = 97.5 bits (242), Expect = 9e-22
Identities = 52/125 (41%), Positives = 68/125 (54%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8561




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25703




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32260




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4280_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4280
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6591
                           PA3287_tr
                           translation of PA3287
                           171
                           99.99
                           99.99
                           0
                           856.0
     

     
     
178115
                           gb|AAG06675.1|AE004751_1
                           (AE004751) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           171
                           99.99
                           99.99
                           0
                           856.0
     

     
     
178116
                           gb|AAO55569.1|
                           (AE016863) ankyrin domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           181
                           55.80
                           71.27
                           10
                           488.0
     

     
     
178117
                           gb|AAN67453.1|AE016372_8
                           (AE016780) ankyrin domain protein [Pseudomonas putida KT2440]
                           181
                           52.48
                           63.53
                           17
                           438.0
     

     
     
178118
                           gb|AAF12383.1|AE001863_8
                           (AE001863) ankyrin-related protein [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           180
                           47.77
                           60.55
                           9
                           392.0
     

     






      

          
GC ORFID: 47282How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3287Glimmer Score: 

          
Start: 3086654Stop: 3087169

          
Length: 516


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3287 translation of PA3287Homolog Bit Score 334.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene863 (ORF: BLASTX 196.0), t_PA3287 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGATAGCCCTCGCCCAGAACTGGATATGGAAACCCAGGAGTTCGTCCACCAGCTGTTCGACCTGGCC 
CGCCAGGGCAACAGCCAGCGCCTCGAGCAACTGCTGCAACAGGGCCTGCCGCCGAACCTGCGCAACCACAAG 
GGCGATAGCCTGCTGATGCTGGCCAGCTACCATGGCCACGCCGACACGGTACGCCTGCTGCTGGCCTACAAG 
GCCGACCCGGACCTGCGCAACCTGGCCGGGCAGACACCGCTGGCCGGCGCTGCGTTCAAGGGCGACCTGGCG 
ATGGTCGAACTGCTCCTCGCCGGCGGCGCCGACGTCGAGGGCGCCTCGGCCGACGGCAAGACCGCACTGATG 
ATGGCGGCCATGTTCAACCAGGCCGAGGTCGCCGCCAGCCTGCTGGCCCACGGCGCCCGTCGTGACGCCCAG 
GACGCCGCCGGGCTGACGCCGCTGGCGGCGGCGCGGATGATGAATGCCGAGGCCACGGTCGCGCTGCTCAGC 
CGGCCCCACTGA