ViewGene
Locus Name:
GeneID:
Location:

GeneID:4273
TrivialName: PA14_50940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50940
PAO1 Ortholog Locus:PA1035
Sequence Length:495
Protein Length:164
Start: 4526078
Stop: 4526572
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04424.1|AE004536_3 (AE004536) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 163/164 (99%), Positives = 164/164 (100%)
Sequence:
ATGAATTACCAGGCGCAAATGATAAGAATTATCAGCCTAATAATGGCGTGGGGAGTTCTCTCCAATCTCTCG
GGCTGCAGCTGGATGACCGGCAGCTTCGAAGACCCCGACGTCAAGCTGCTGAAGGTGGAAGTGGTCAAGGCA
CGCTTGCTGGAACAGGAGTTCGTGATGCGCTTCCGCATCGACAACCCCAACGATTTCAGCCTGCCGGTACGC
GGCCTGCAGTACGCCGTGCAACTGAACGACATCCAGCTCGCAGAAGGCGAGTCCGGCCAGTGGTTCACGGTT
CCCGCCCACGGCCACGAGGTATTCGACGTGCCGGTGCGAACCAATCTCTGGCGCCACATGAAATACATCGTC
AAGCTCCTTGAGCGTCCCGAGGAGCCGATCCGCTACCGCCTGCAGGGCGAAGTGAAGACCGGACTGATGTTC
GGCCGCAGCGTGCACCTGAGACGAAATGGCGAGATAATTCCCGGCGATTTCATCCCAGAATAG
Translation:
MNYQAQMIRIISLIMAWGVLSNLSGCSWMTGSFEDPDVKLLKVEVVKARLLEQEFVMRFRIDNPNDFSLPVR
GLQYAVQLNDIQLAEGESGQWFTVPAHGHEVFDVPVRTNLWRHMKYIVKLLERPEEPIRYRLQGEVKTGLMF
GRSVHLRRNGEIIPGDFIPE*
AnnotationID:4279GeneID:4273
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 18:06:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1035
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5608
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5608, Conserved secreted protein [Function unknown]
      CD-Length = 161 residues, 100.0% aligned
      Score =  200 bits (509), Expect = 8e-53






   
Genomic Context:






   
Comment:


















    ReferenceID:8547




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25689




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4273
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6578
                           PA1035_tr
                           translation of PA1035
                           164
                           99.39
                           99.99
                           0
                           858.0
     

     
     
177919
                           gb|AAG04424.1|AE004536_3
                           (AE004536) hypothetical protein PA1035 [Pseudomonas aeruginosa PAO1]
                           164
                           99.39
                           99.99
                           0
                           858.0
     

     
     
177920
                           gb|AAO57586.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           167
                           49.10
                           71.25
                           6
                           436.0
     

     
     
177921
                           gb|AAN66740.1|AE016302_2
                           (AE016778) lipoprotein, putative [Pseudomonas putida KT2440]
                           168
                           44.64
                           66.66
                           5
                           403.0
     

     






      

          
GC ORFID: 47275How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1035Glimmer Score: 

          
Start: 427830Stop: 427336

          
Length: 495


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1035 translation of PA1035Homolog Bit Score 335.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6091 (ORF: BLASTX 154.0), t_PA1035 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTACCAGGCGCAAATGATAAGAATTATCAGCCTAATAATGGCGTGGGGAGTTCTCTCCAATCTCTCG 
GGCTGCAGCTGGATGACCGGCAGCTTCGAAGACCCCGACGTCAAGCTGCTGAAGGTGGAAGTGGTCAAGGCA 
CGCTTGCTGGAACAGGAGTTCGTGATGCGCTTCCGCATCGACAACCCCAACGATTTCAGCCTGCCGGTACGC 
GGCCTGCAGTACGCCGTGCAACTGAACGACATCCAGCTCGCAGAAGGCGAGTCCGGCCAGTGGTTCACGGTT 
CCCGCCCACGGCCACGAGGTATTCGACGTGCCGGTGCGAACCAATCTCTGGCGCCACATGAAATACATCGTC 
AAGCTCCTTGAGCGTCCCGAGGAGCCGATCCGCTACCGCCTGCAGGGCGAAGTGAAGACCGGACTGATGTTC 
GGCCGCAGCGTGCACCTGAGACGAAATGGCGAGATAATTCCCGGCGATTTCATCCCAGAATAG