ViewGene
Locus Name:
GeneID:
Location:

GeneID:4261
TrivialName: PA14_03590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03590
PAO1 Ortholog Locus:PA0276
Sequence Length:516
Protein Length:171
Start: 325051
Stop: 325566
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03665.1|AE004465_11 (AE004465) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 170/171 (99%), Positives = 170/171 (99%)
Sequence:
ATGAAAACCCTAGTCGATCACCTTGCGCAATACGCCGCCTACCACCGCGACCGGCGCAACATCTTCAGCCAT
TTCATCGGCATTCCGATGATCGTCCTCTCCATCGCCGTGTTGCTGGCGCGGCCGGCGCTGGGGTTCGGCCTG
TCTCCGGCGCTGCTGCTGGCGCTCGCCGCGGCGCTGTTCTACCTGCGCCTGGACCTGCGCTTCGGCGCGGCC
ATGACGGCGCTGCTGGCGCTGACGGTGTGGGGCGCTGCGCAATTGGCGGCGGGGACTACCGCGGCCTGGCTG
GGCTGGGGCGTTGGCCTGTTCGTGGTCGGCTGGATCATCCAGTTCGTCGGTCATTACTACGAAGGGCGCAAG
CCGGCCTTCGTCGACGATCTCAGCGGGTTGATCGTCGGTCCGCTCTTCGTGCTGGCGGAACTGGCCTTTCTG
CTGGGGCTGCGCGGCGACGTGCAGCGCGAGGTCGAGGAGCGCGCCGGCCCGACCTGCATTCGCGAGCACAAG
CGGGCGGCGTGA
Translation:
MKTLVDHLAQYAAYHRDRRNIFSHFIGIPMIVLSIAVLLARPALGFGLSPALLLALAAALFYLRLDLRFGAA
MTALLALTVWGAAQLAAGTTAAWLGWGVGLFVVGWIIQFVGHYYEGRKPAFVDDLSGLIVGPLFVLAELAFL
LGLRGDVQREVEERAGPTCIREHKRAA*
AnnotationID:4267GeneID:4261
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:38
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0276
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4539
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67005.1|AE016328_10 (AE016779) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 174

 Score =  221 bits (562), Expect = 2e-57
 Identities = 110/171 (64%), Positives = 130/171 (76%), Gaps = 3/171 (1%)

>emb|CAD17957.1| (AL646081) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 189

 Score =  203 bits (517), Expect = 3e-52
 Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 5/164 (3%)






 
Structural Features:
COG4539, COG4539, Predicted membrane protein
CD-Length = 180 residues,  99.4% aligned
Score =  217 bits (553), Expect = 8e-58
Identities = 100/179 (55%), Positives = 118/179 (65%), Gaps = 8/179 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8523




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25665




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33627




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4261_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4261
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6557
                           PA0276_tr
                           translation of PA0276
                           171
                           99.41
                           99.41
                           0
                           868.0
     

     
     
177704
                           gb|AAG03665.1|AE004465_11
                           (AE004465) hypothetical protein PA0276 [Pseudomonas aeruginosa PAO1]
                           171
                           99.41
                           99.41
                           0
                           868.0
     

     
     
177705
                           gb|AAO53857.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           175
                           64.57
                           78.28
                           5
                           591.0
     

     
     
177706
                           gb|AAN67005.1|AE016328_10
                           (AE016779) membrane protein, putative [Pseudomonas putida KT2440]
                           174
                           63.21
                           75.28
                           3
                           565.0
     

     
     
177707
                           gb|AAD39556.1|
                           (AF031417) PRS2-like protein [Pseudomonas putida]
                           174
                           62.64
                           75.28
                           3
                           562.0
     

     






      

          
GC ORFID: 47263How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0276Glimmer Score: 

          
Start: 6126392Stop: 6126907

          
Length: 516


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0276 translation of PA0276Homolog Bit Score 338.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3918 (ORF: BLASTX 227.0), t_PA0276 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCCTAGTCGATCACCTTGCGCAATACGCCGCCTACCACCGCGACCGGCGCAACATCTTCAGCCAT 
TTCATCGGCATTCCGATGATCGTCCTCTCCATCGCCGTGTTGCTGGCGCGGCCGGCGCTGGGGTTCGGCCTG 
TCTCCGGCGCTGCTGCTGGCGCTCGCCGCGGCGCTGTTCTACCTGCGCCTGGACCTGCGCTTCGGCGCGGCC 
ATGACGGCGCTGCTGGCGCTGACGGTGTGGGGCGCTGCGCAATTGGCGGCGGGGACTACCGCGGCCTGGCTG 
GGCTGGGGCGTTGGCCTGTTCGTGGTCGGCTGGATCATCCAGTTCGTCGGTCATTACTACGAAGGGCGCAAG 
CCGGCCTTCGTCGACGATCTCAGCGGGTTGATCGTCGGTCCGCTCTTCGTGCTGGCGGAACTGGCCTTTCTG 
CTGGGGCTGCGCGGCGACGTGCAGCGCGAGGTCGAGGAGCGCGCCGGCCCGACCTGCATTCGCGAGCACAAG 
CGGGCGGCGTGA