ViewGene
Locus Name:
GeneID:
Location:

GeneID:4232
TrivialName: PA14_67870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67870
PAO1 Ortholog Locus:
Sequence Length:837
Protein Length:278
Start: 6060736
Stop: 6061572
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGCTAGCCGATCACCGGCCCTGTGCGCTGCGGCGCAACGTGCCTCAGCGCACCACGATACCGCGGCTGGC
GAGGTAGGCCTTGGCTTCCGGCACGGTGTACTCGCCGAAGTGGAAGATGCTCGCCGCGAGCACCGCGTCGGC
CTTGCCCTCGAGGATGCCGGCGGCCAGGTGCTCCAGGTTGCCGACGCCGCCGGAAGCAATCACCGGTACGTT
CACCGCCTCGCTGATGGCGCGGGTCACGCCCAGGTCGTAACCGCTCTTCACGCCGTCCTGGTCCATGCTGGT
CAGGAGAATCTCGCCGGCGCCCAGGTCTTCCATCTTCTTCGCCCAGAGCACGGCATCCAGCCCGGTGGGCTT
GCGCCCGCCATGGGTGAAGATTTCCCAGCGCGGCGCCTCGCCCGGGGCGGAAACCTTCTTCGCATCGATGGC
GACCACGATGCACTGCGAGCCGAAGCGGTCGGCGGCCTCGCCGACGAACTCGGGGTTGAACACCGCGGCGGT
GTTGATCGAGACCTTGTCCGCGCCGGCATTCAACAGGTTGCGGATGTCCTGCACGCTGCGTACGCCGCCGCC
CACGGTCAGCGGAATGAACACCTGACTGGCCATGCGCTCGACGGTATGCAGGGTGGTGTCGCGCCCGTCGAC
GCTGGCGGTGATGTCGAGGAAGGTGATCTCGTCGGCACCCTGCTCATCGTAGCGGCGGGCGATCTCGACCGG
ATCGCCGGCGTCGCGGATGTTCTCGAACTTGACGCCCTTGACCACTCGGCCATTGTCCACGTCGAGGCAGGG
GATGATGCGTTTTGCCAGTGCCATGCGGTTCGCCTCAGGCCTTGA
Translation:
MASRSPALCAAAQRASAHHDTAAGEVGLGFRHGVLAEVEDARREHRVGLALEDAGGQVLQVADAAGSNHRYV
HRLADGAGHAQVVTALHAVLVHAGQENLAGAQVFHLLRPEHGIQPGGLAPAMGEDFPARRLARGGNLLRIDG
DHDALRAEAVGGLADELGVEHRGGVDRDLVRAGIQQVADVLHAAYAAAHGQRNEHLTGHALDGMQGGVAPVD
AGGDVEEGDLVGTLLIVAAGDLDRIAGVADVLELDALDHSAIVHVEAGDDAFCQCHAVRLRP*
AnnotationID:4238GeneID:4232
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8465




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25607




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 47234How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold6_revised_gene693Glimmer Score: 

          
Start: 5324421Stop: 5325257

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold6_revised_gene6937Homolog Bit Score 342.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCTAGCCGATCACCGGCCCTGTGCGCTGCGGCGCAACGTGCCTCAGCGCACCACGATACCGCGGCTGGC 
GAGGTAGGCCTTGGCTTCCGGCACGGTGTACTCGCCGAAGTGGAAGATGCTCGCCGCGAGCACCGCGTCGGC 
CTTGCCCTCGAGGATGCCGGCGGCCAGGTGCTCCAGGTTGCCGACGCCGCCGGAAGCAATCACCGGTACGTT 
CACCGCCTCGCTGATGGCGCGGGTCACGCCCAGGTCGTAACCGCTCTTCACGCCGTCCTGGTCCATGCTGGT 
CAGGAGAATCTCGCCGGCGCCCAGGTCTTCCATCTTCTTCGCCCAGAGCACGGCATCCAGCCCGGTGGGCTT 
GCGCCCGCCATGGGTGAAGATTTCCCAGCGCGGCGCCTCGCCCGGGGCGGAAACCTTCTTCGCATCGATGGC 
GACCACGATGCACTGCGAGCCGAAGCGGTCGGCGGCCTCGCCGACGAACTCGGGGTTGAACACCGCGGCGGT 
GTTGATCGAGACCTTGTCCGCGCCGGCATTCAACAGGTTGCGGATGTCCTGCACGCTGCGTACGCCGCCGCC 
CACGGTCAGCGGAATGAACACCTGACTGGCCATGCGCTCGACGGTATGCAGGGTGGTGTCGCGCCCGTCGAC 
GCTGGCGGTGATGTCGAGGAAGGTGATCTCGTCGGCACCCTGCTCATCGTAGCGGCGGGCGATCTCGACCGG 
ATCGCCGGCGTCGCGGATGTTCTCGAACTTGACGCCCTTGACCACTCGGCCATTGTCCACGTCGAGGCAGGG 
GATGATGCGTTTTGCCAGTGCCATGCGGTTCGCCTCAGGCCTTGA