ViewGene
Locus Name:
GeneID:
Location:

GeneID:4204
TrivialName: PA14_29300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29300
PAO1 Ortholog Locus:PA2692
Sequence Length:525
Protein Length:174
Start: 2535536
Stop: 2535012
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06080.1|AE004697_5 (AE004697) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 174/174 (100%), Positives = 174/174 (100%)
Sequence:
ATGGCTCTCTATAGCGCCGGCGTCGAATACGGCATCCACTGCCTGTTGTTCCTCGCCGACGAGAAAGGCGAC
AGCCGCGAGTCCAGCGTGCGCACCCTCGCCGAGTTGCAGGGCGTGCCGCCGGAACTGCTGGCCAAGGTCTTC
ACCCGCCTGGCCAAGGCCGGCCTGGTGGCTGCCACCGAAGGCGTGCGCGGCGGCTTCCGCCTGGCGCGGCCG
GCCAACGAAATCAGCGTGCTCGACGTGGTCCGCGCCATCGACGGCGACAAATCGATCTTCGAATGCCGCGAG
GTCCGCGAGCGCTGCGCGATCTTCGAAGGCAACCCGCCTTCCTGGGCGACCCGCAACACCTGCTCGATCCAC
GCGGTGATGCTCACCGCGCAGAAGCGCATGGAAGAAGCGCTGGCCCAGCAGACCATCCTCGACCTGGTACGC
CGGGTGGGGCGTATCGCGCCGCCGGAGTTCGGCGAAGAAGTGCTGCGCTGGATGGATGCCAGCCGGGAAGGA
CGCGGCGGCTCCCGCGACTAG
Translation:
MALYSAGVEYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAATEGVRGGFRLARP
ANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIHAVMLTAQKRMEEALAQQTILDLVR
RVGRIAPPEFGEEVLRWMDASREGRGGSRD*
AnnotationID:4211GeneID:4204
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 19:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2692
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1959
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1959, Predicted transcriptional regulator [Transcription]
CD-Length = 150 residues,  98.7% aligned
Score =  132 bits (332), Expect = 3e-32
Identities = 52/159 (32%), Positives = 73/159 (45%), Gaps = 11/159 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8410




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25551




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36332




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4204_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4204
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6487
                           PA2692_tr
                           translation of PA2692
                           174
                           99.99
                           99.99
                           0
                           885.0
     

     
     
176604
                           gb|AAG06080.1|AE004697_5
                           (AE004697) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           174
                           99.99
                           99.99
                           0
                           885.0
     

     
     
176605
                           gb|AAL45093.1|
                           (AE009358) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           181
                           50.82
                           68.50
                           9
                           480.0
     

     
     
176606
                           gb|AAK89140.1|
                           (AE008255) AGR_L_1131p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           193
                           47.66
                           64.24
                           21
                           480.0
     

     






      

          
GC ORFID: 47206How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2692Glimmer Score: 

          
Start: 2418390Stop: 2418914

          
Length: 525


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2692 translation of PA2692Homolog Bit Score 345.0

          
Other Homologs:  t_PA2692 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTCTCTATAGCGCCGGCGTCGAATACGGCATCCACTGCCTGTTGTTCCTCGCCGACGAGAAAGGCGAC 
AGCCGCGAGTCCAGCGTGCGCACCCTCGCCGAGTTGCAGGGCGTGCCGCCGGAACTGCTGGCCAAGGTCTTC 
ACCCGCCTGGCCAAGGCCGGCCTGGTGGCTGCCACCGAAGGCGTGCGCGGCGGCTTCCGCCTGGCGCGGCCG 
GCCAACGAAATCAGCGTGCTCGACGTGGTCCGCGCCATCGACGGCGACAAATCGATCTTCGAATGCCGCGAG 
GTCCGCGAGCGCTGCGCGATCTTCGAAGGCAACCCGCCTTCCTGGGCGACCCGCAACACCTGCTCGATCCAC 
GCGGTGATGCTCACCGCGCAGAAGCGCATGGAAGAAGCGCTGGCCCAGCAGACCATCCTCGACCTGGTACGC 
CGGGTGGGGCGTATCGCGCCGCCGGAGTTCGGCGAAGAAGTGCTGCGCTGGATGGATGCCAGCCGGGAAGGA 
CGCGGCGGCTCCCGCGACTAG