ViewGene
Locus Name:
GeneID:
Location:

GeneID:4181
TrivialName: PA14_27750
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27750
PAO1 Ortholog Locus:
Sequence Length:663
Protein Length:220
Start: 2407091
Stop: 2407752
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GID4181 (PA14_27750) and GID6169 (PA14_27760) replaced by GID7406 (PA14_27755). Homology: gb|AAG06201.1|AE004708_7 (AE004708) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 165/167 (98%), Positives = 166/167 (99%)
Sequence:
ATGTTGACCATCTGGGGCCGGAAGAACTCGAGCAATGTGCGCAAGGCGCTGTGGTGCGCCGAGGAGGCTGGC
CTGGAGTACCGGACGGTGGATGCCGGCGGGGCGTTCGGCCTGGTGGATGAGCCGGCGTTCCGCGCGATGAAC
CCGAACGGTCGGGTGCCGGTGATCGAGGACGACGGCTTCGTCCTCTGGGAATCCAACGCCATCGTCCGCTAC
CTGGCCGCCCGCTATGCGCCGGGCGACCTCTATCCGCAGGACCCGGTGCGCCGCGCCGACGCCGACAAGTGG
ATGGACTGGACCACCTCGACTCTCGCCGGGCCGTTCcGcgACCTGTTCTGGGGAAccCTGCGTACGccGcCg
gagCAACGCGAcaAGGCCCTGATCGCAAAGGCGCTGCAGACCTGCGGCGAGTTGCTGCGGGTGCCGGACCaG
ACCCTGGCCGGCCAACCCTGGCTGTCCGGCGAACGCTTCGGCATGGGTGACATTCCCCTGGGGCTGTTTCAT
CTACGCCTGGTTCGAGATGCCCATCGAGCGCCCGCCGCTGCCCCACCTCGAGGCCTGGTACCTGCGCTTGCG
CGAGCGCCCGGCGTTCCGCACCGCGGTAATGACCGAACTGACCTGAGCCGGCTACTGTTGCATTTTGTTACC
CGTAGCCTTATCTAG
Translation:
MLTIWGRKNSSNVRKALWCAEEAGLEYRTVDAGGAFGLVDEPAFRAMNPNGRVPVIEDDGFVLWESNAIVRY
LAARYAPGDLYPQDPVRRADADKWMDWTTSTLAGPFRDLFWGTLRTPPEQRDKALIAKALQTCGELLRVPDQ
TLAGQPWLSGERFGMGDIPLGLFHLRLVRDAHRAPAAAPPRGLVPALARAPGVPHRGNDRTDLSRLLLHFVT
RSLI*
AnnotationID:4188GeneID:4181
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 14:02:04
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57323.1| (AE016869) glutathione S-transferase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 207

 Score =  237 bits (604), Expect = 4e-62
 Identities = 114/168 (67%), Positives = 132/168 (78%), Gaps = 1/168 (0%)

>gb|AAM38661.1| (AE012031) glutathione S-transferase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 207

 Score =  233 bits (594), Expect = 6e-61
 Identities = 113/166 (68%), Positives = 128/166 (77%), Gaps = 1/166 (0%)

>gb|AAN67513.1|AE016380_1 (AE016781) glutathione S-transferase family protein [Pseudomonas
           putida KT2440]
          Length = 207

 Score =  220 bits (560), Expect = 5e-57
 Identities = 106/168 (63%), Positives = 125/168 (74%), Gaps = 1/168 (0%)








 
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 211 residues,  86.3% aligned
Score =  116 bits (291), Expect = 2e-27
Identities = 58/184 (31%), Positives = 77/184 (41%), Gaps = 6/184 (3%)






   
Genomic Context:






   
Comment:
GID4181 (PA14_27750) and GID6169 (PA14_27760) replaced by GID7406 (PA14_27755).


















    ReferenceID:8364




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25505




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36247




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4181_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4181
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6454
                           PA2813_tr
                           translation of PA2813
                           234
                           74.35
                           76.92
                           42
                           889.0
     

     
     
176209
                           gb|AAG06201.1|AE004708_7
                           (AE004708) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
                           234
                           74.35
                           76.92
                           42
                           889.0
     

     
     
176211
                           gb|AAM38661.1|
                           (AE012031) glutathione S-transferase [Xanthomonas axonopodis pv. citri str. 306]
                           243
                           50.20
                           58.43
                           59
                           599.0
     

     
     
176210
                           gb|AAO57323.1|
                           (AE016869) glutathione S-transferase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           49.58
                           58.26
                           57
                           604.0
     

     
     
176212
                           gb|AAM43023.1|
                           (AE012497) glutathione S-transferase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           235
                           49.36
                           57.02
                           48
                           576.0
     

     






      

          
GC ORFID: 47183How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2813Glimmer Score: 

          
Start: 2546836Stop: 2546174

          
Length: 663


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2813 translation of PA2813Homolog Bit Score 348.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2650 (ORF: BLASTX 239.0), psyr_15may02_Scaffold11_revised_gene1853 (ORF: BLASTX 136.0), t_PA2813 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGACCATCTGGGGCCGGAAGAACTCGAGCAATGTGCGCAAGGCGCTGTGGTGCGCCGAGGAGGCTGGC 
CTGGAGTACCGGACGGTGGATGCCGGCGGGGCGTTCGGCCTGGTGGATGAGCCGGCGTTCCGCGCGATGAAC 
CCGAACGGTCGGGTGCCGGTGATCGAGGACGACGGCTTCGTCCTCTGGGAATCCAACGCCATCGTCCGCTAC 
CTGGCCGCCCGCTATGCGCCGGGCGACCTCTATCCGCAGGACCCGGTGCGCCGCGCCGACGCCGACAAGTGG 
ATGGACTGGACCACCTCGACTCTCGCCGGGCCGTTCcGcgACCTGTTCTGGGGAAccCTGCGTACGccGcCg 
gagCAACGCGAcaAGGCCCTGATCGCAAAGGCGCTGCAGACCTGCGGCGAGTTGCTGCGGGTGCCGGACCaG 
ACCCTGGCCGGCCAACCCTGGCTGTCCGGCGAACGCTTCGGCATGGGTGACATTCCCCTGGGGCTGTTTCAT 
CTACGCCTGGTTCGAGATGCCCATCGAGCGCCCGCCGCTGCCCCACCTCGAGGCCTGGTACCTGCGCTTGCG 
CGAGCGCCCGGCGTTCCGCACCGCGGTAATGACCGAACTGACCTGAGCCGGCTACTGTTGCATTTTGTTACC 
CGTAGCCTTATCTAG