ViewGene
Locus Name:
GeneID:
Location:

GeneID:4167
TrivialName: PA14_33150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33150
PAO1 Ortholog Locus:PA2434
Sequence Length:546
Protein Length:181
Start: 2902272
Stop: 2902817
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05822.1|AE004670_10 (AE004670) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 180/181 (99%), Positives = 180/181 (99%)
Sequence:
GTGAGGCAGGCGCAAACGCGACGCAACGGCTGGCGCTGGCTGGCCCTGGCGGTCGGCACGCTGTCCGCGCTG
AGCCTGGCCGAGGCGTCGATGGCGCGCTGGCCGGCGGGCTGGCAGGTCAGCGACCTGCCCGCCGCGCAGCCC
GGCCAGGCCGGCGCCGGCCAGCGCCAGCGCGCGGTCAAGTTGCAGGCAGACGGCTCCCAGGCACTGGTGATG
GAAGTGACGCGGATGCCCTTGCAGAGCGGGCAGGCAGTGAACCTGGAGAAAGTCCTCGGGCACATGCGCAAG
CTGGTGCAGATCGAGTTCCTGCGCAACGGCCTGCAGACCGCCTGCACCTCGCCGCAGCCGTCCACCACCGGC
GGGCTGGCGGCGCTGGAGACCACCTGCACCATTCGCCAGCGCGGCGCCGTGGTGATGAAGCAGACCTTGCTC
ACCGCGGCCGGCAAGACCTCGGCCTATTCGCTGTCCTATGCCGGCCTGGCCGAGGCCTACGACGCCAGCCAG
GCGGAAATCCGCGCGGTACGGGAAAGCCTGCGCTTCGAGTGA
Translation:
MRQAQTRRNGWRWLALAVGTLSALSLAEASMARWPAGWQVSDLPAAQPGQAGAGQRQRAVKLQADGSQALVM
EVTRMPLQSGQAVNLEKVLGHMRKLVQIEFLRNGLQTACTSPQPSTTGGLAALETTCTIRQRGAVVMKQTLL
TAAGKTSAYSLSYAGLAEAYDASQAEIRAVRESLRFE*
AnnotationID:4174GeneID:4167
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:37
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2434
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identical to PA2434 of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15036




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25478




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4167
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6438
                           PA2434_tr
                           translation of PA2434
                           181
                           99.44
                           99.44
                           0
                           898.0
     

     
     
176117
                           gb|AAG05822.1|AE004670_10
                           (AE004670) hypothetical protein PA2434 [Pseudomonas aeruginosa PAO1]
                           181
                           98.89
                           99.44
                           0
                           895.0
     

     
     
176118
                           gb|AAO56592.1|
                           (AE016867) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           34.71
                           43.80
                           65
                           338.0
     

     






      

          
GC ORFID: 47169How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2434Glimmer Score: 

          
Start: 2051644Stop: 2051099

          
Length: 546


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2434 translation of PA2434Homolog Bit Score 350.0

          
Other Homologs:  t_PA2434 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGGCAGGCGCAAACGCGACGCAACGGCTGGCGCTGGCTGGCCCTGGCGGTCGGCACGCTGTCCGCGCTG 
AGCCTGGCCGAGGCGTCGATGGCGCGCTGGCCGGCGGGCTGGCAGGTCAGCGACCTGCCCGCCGCGCAGCCC 
GGCCAGGCCGGCGCCGGCCAGCGCCAGCGCGCGGTCAAGTTGCAGGCAGACGGCTCCCAGGCACTGGTGATG 
GAAGTGACGCGGATGCCCTTGCAGAGCGGGCAGGCAGTGAACCTGGAGAAAGTCCTCGGGCACATGCGCAAG 
CTGGTGCAGATCGAGTTCCTGCGCAACGGCCTGCAGACCGCCTGCACCTCGCCGCAGCCGTCCACCACCGGC 
GGGCTGGCGGCGCTGGAGACCACCTGCACCATTCGCCAGCGCGGCGCCGTGGTGATGAAGCAGACCTTGCTC 
ACCGCGGCCGGCAAGACCTCGGCCTATTCGCTGTCCTATGCCGGCCTGGCCGAGGCCTACGACGCCAGCCAG 
GCGGAAATCCGCGCGGTACGGGAAAGCCTGCGCTTCGAGTGA