ViewGene
Locus Name:
GeneID:
Location:

GeneID:4151
TrivialName: PA14_46440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46440
PAO1 Ortholog Locus:PA1377
Sequence Length:534
Protein Length:177
Start: 4131147
Stop: 4130614
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04766.1|AE004567_5 (AE004567) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/177 (100%), Positives = 177/177 (100%)
Sequence:
ATGACCGCCGAATCGCCGACGATCCGCCTCGAACGCTACAGCGAACGCCACGTGGAAGGCCTCACCGCCCTG
TACAACGACCCCGCCGTGGCCCGCCAGGTCCTGCAGATGCCCTACCAGTCGGTGGAGCAGCGCCGCAAGCGC
CTGCACGACAGCGCGGACGACGACCGCCTGCTGATCCTCGTCGCCCTGCACCAGGGGGACGTCATCGGCAGC
GCCAGCCTCGAACAGCACCCGCGCATCCGCCGCAGCCACAGCGGCAGCATCGGCATGGGTGTCGCCGTCGCC
TGGCAGGGCAAGGGAGTCGGCAGCCGCCTGCTCGGCGAACTGCTGGACATCGCCGACAACTGGATGAACCTG
CGCCGCGTCGAACTCACCGTCTACACCGACAACGCCCCGGCGCTGGCGCTGTATCGCAAGTTCGGCTTCGAG
ACCGAAGGGGAGATGCGTGACTATGCGGTGCGGGATGGGCGCTTCGTGGACGTGTACAGCATGGCGCGCTTG
AGGAGGGTCGAGGGGCGGGTGGGGGAGTGA
Translation:
MTAESPTIRLERYSERHVEGLTALYNDPAVARQVLQMPYQSVEQRRKRLHDSADDDRLLILVALHQGDVIGS
ASLEQHPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLDIADNWMNLRRVELTVYTDNAPALALYRKFGFE
TEGEMRDYAVRDGRFVDVYSMARLRRVEGRVGE*
AnnotationID:4158GeneID:4151
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 20:08:12
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA1377
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1670,pfam00583
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56116.1| (AE016865) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 167

 Score =  214 bits (544), Expect = 2e-55
 Identities = 108/169 (63%), Positives = 131/169 (77%), Gaps = 2/169 (1%)

>gb|AAL43071.1| (AE009158) acetyltransferase [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 177

 Score =  130 bits (327), Expect = 4e-30
 Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 3/151 (1%)






 
Structural Features:
COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins 
[Translation, ribosomal structure and biogenesis]
CD-Length = 187 residues,  95.2% aligned
Score = 78.9 bits (193), Expect = 3e-16
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues, 100.0% aligned
Score = 58.7 bits (142), Expect = 3e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8304




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25447




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37400




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4151_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4151
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6415
                           PA1377_tr
                           translation of PA1377
                           177
                           99.99
                           99.99
                           0
                           903.0
     

     
     
175656
                           gb|AAG04766.1|AE004567_5
                           (AE004567) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           177
                           99.99
                           99.99
                           0
                           903.0
     

     
     
175657
                           gb|AAO56116.1|
                           (AE016865) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           177
                           61.01
                           74.01
                           10
                           546.0
     

     
     
175662
                           dbj|BAB50203.1|
                           (AP003001) hypothetical protein [Mesorhizobium loti]
                           185
                           40.54
                           54.05
                           19
                           317.0
     

     
     
175667
                           gb|AAQ61290.1|
                           (AE016922) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           182
                           38.46
                           51.64
                           18
                           311.0
     

     






      

          
GC ORFID: 47153How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1377Glimmer Score: 

          
Start: 822762Stop: 823295

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1377 translation of PA1377Homolog Bit Score 352.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene6976 (ORF: BLASTX 221.0), psyr_15may02_Scaffold3_revised_gene4251 (ORF: BLASTX 107.0), t_PA1377 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCGAATCGCCGACGATCCGCCTCGAACGCTACAGCGAACGCCACGTGGAAGGCCTCACCGCCCTG 
TACAACGACCCCGCCGTGGCCCGCCAGGTCCTGCAGATGCCCTACCAGTCGGTGGAGCAGCGCCGCAAGCGC 
CTGCACGACAGCGCGGACGACGACCGCCTGCTGATCCTCGTCGCCCTGCACCAGGGGGACGTCATCGGCAGC 
GCCAGCCTCGAACAGCACCCGCGCATCCGCCGCAGCCACAGCGGCAGCATCGGCATGGGTGTCGCCGTCGCC 
TGGCAGGGCAAGGGAGTCGGCAGCCGCCTGCTCGGCGAACTGCTGGACATCGCCGACAACTGGATGAACCTG 
CGCCGCGTCGAACTCACCGTCTACACCGACAACGCCCCGGCGCTGGCGCTGTATCGCAAGTTCGGCTTCGAG 
ACCGAAGGGGAGATGCGTGACTATGCGGTGCGGGATGGGCGCTTCGTGGACGTGTACAGCATGGCGCGCTTG 
AGGAGGGTCGAGGGGCGGGTGGGGGAGTGA