ViewGene
Locus Name:
GeneID:
Location:

GeneID:415
TrivialName: PA14_43670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43670
PAO1 Ortholog Locus:PA1611
Sequence Length:1956
Protein Length:651
Start: 3887946
Stop: 3889901
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05000.1|AE004589_3 (AE004589) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
Identities = 649/651 (99%), Positives = 650/651 (99%)
Sequence:
ATGAGCCAGCGCCACGGCTGGGACATCCGTACCCGCATGCTGGCGATTAGCCTGGGCCCGGCGCTGCTGCTG
ACCCTGTTGCTCACCGCCTACTTCACCTACTCGCGCCTGCAGGACCTGCGCCAGGAACTGACCCATACCGGC
CAGTTGATCGCCGACCAGTTGGCGCCGGCCGCCGAATACGGCGTGATCGCCGGCAACACGCCCGTGCTGCAG
AAGCTGCTGCAGGCCACCCTCGACACCCCGCATGTGCGCTTCATCGAGGTACGCGACCGCAACGACAATATC
CTGGTGTACGTCGAACAGTTGTCCGGCGCGTTGCAGAACGCCGCGCCGATCGACATCTTCCACTCCACCATC
CAGCGCCAGCGCATCGCCCTGGCCAGCGACCCGCTGCTGGACGGCGCCAGCGAAGGCGACGGCCAGTCCGGC
GAGGACTACCTCGGCCGGGTGGTGGTCGGCATGTCCAACGACGCCTTCAGCCAGCGGCAACAGGAAATCCTC
CTGAAGGCCGCCCTGCTGGCCGCCTTCGCCCTGATCCTCACCTTCCTCGTCGCGCGCCGCCTGGCGCAGCGC
CTGTCGGCGCCGATCAGTACCATGGGCCAGGCGGTCGAGGCGATCCAGAGCGGCGACTACAAGACCAGCCTG
CCGATCCTCGACGACGGCGAGATCGGCGACCTGGCCCGTCACATCAACAATCTCGCCAGCGGGCTGGACCGC
GCGAGCCGGGAACAGGAACAGGCGATCGGCCAATTGATCAGCGCCCGCGAGGAAGCGGAGCAGGCGAACCGG
GCGAAGTCCGACTTCCTGGCGATGATGAGCCACGAGCTTCGCACCCCGATGAACGGCGTGCTGGGCATGCTG
CAACTGCTGGAAACCACCGAGCAGACCCGCGAACAGGCCGAGTACACGGCGCTGGCCACCGAGTCCACCGAA
CACCTGCTGAAGGTCATCAACGACATTCTCGATTTCTCAAGGATCGAACGCGGCGCGCTGGAACTGGAGTGC
ATTCCCTTCAACCTGCTGGAACTGGTGCAAGGCTCCGCCCTGGTGTTCCAGCACAGCGCCCAGCAACGCGGA
CTGGCGCTGGAATTGCAGATCCAGGCCGGCCTGGAGAATATCGAGGTCTGCGGCGATCCGACGCGTATCCGA
CAGATCCTGGTGAATCTGCTGGGTAATGCGCTGAAATTCACCGAGGAAGGCGCCATCCATCTCAGCCTGGAG
TGGCAGGCGCTCGATCACGACGTACTGTGGCTGACCTGCGCGGTGCACGACAGCGGCATCGGCATCTCGCCG
GAACGCCTGGAACATATGTTCGACGCCTTCCAGCAGGCGGATTCGTCGATTTCCCGGCGCTACGGCGGCACC
GGGCTCGGCCTGGCGATCGCCAGGACCCTGGCGGAACGGATGGGCGGCACCCTGCAGGCAGAGAGCAAGGAA
GGCTCGGGATCGACCTTCACCCTGGAGATTCCGCTGCCCTTCCAGCAGTCGCCGGCGCACCGGCAGCAGGCC
GCTGGCGACGCCGCCCCGATTGCCGCCGGTCAGGAAATCCTCCTGGTCGAGGACAATCCGGTGAACCAGACA
GTCATAGAAGCCATGTTGCGCAGCCTCGGCTATCGCGTCACCCTGGTCGCCGACGGTATCCAGGCGGTACGC
AGCGCCGAGCGCCAGCGCTACGACGCGATCCTGATGGACTGCCGCCTGCCGGTGCTCGACGGCTACTCGGCG
ACACGGGAAATCAGGGCCCAGGAGAACGGCCGGCGGGTACCGATCATCGCCCTGACCGCCAACGCCCTGCAG
GGCGATCGGGAGAACTGCCTGCAGGCGGGAATGAACGATTACCTGGCCAAGCCATTCAAACGGGCGGAATTG
CAACGCATACTGCAACGCTGGATCGGCTCGCAGCCGGAACGCCCCGTGACGTCGAACGAAACCGGACGAGGG
GAGCCGGAATGA
Translation:
MSQRHGWDIRTRMLAISLGPALLLTLLLTAYFTYSRLQDLRQELTHTGQLIADQLAPAAEYGVIAGNTPVLQ
KLLQATLDTPHVRFIEVRDRNDNILVYVEQLSGALQNAAPIDIFHSTIQRQRIALASDPLLDGASEGDGQSG
EDYLGRVVVGMSNDAFSQRQQEILLKAALLAAFALILTFLVARRLAQRLSAPISTMGQAVEAIQSGDYKTSL
PILDDGEIGDLARHINNLASGLDRASREQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGML
QLLETTEQTREQAEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRG
LALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP
ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIPLPFQQSPAHRQQA
AGDAAPIAAGQEILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA
TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIGSQPERPVTSNETGRG
EPE*
AnnotationID:424GeneID:415
AnnotatorUID: diggins
Modification Date/Time: 2005-02-26 19:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative sensor/response regulator hybrid
Cell Localization:()
Synonyms:PA1611
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642,smart00387,cd00156
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69754.1|AE016611_12 (AE016789) sensor histidine kinase/response regulator [Pseudomonas
           putida KT2440]
          Length = 643

 Score =  802 bits (2071), Expect = 0.0
 Identities = 415/636 (65%), Positives = 499/636 (78%), Gaps = 2/636 (0%)

>gb|AAO55728.1| (AE016863) sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 641

 Score =  739 bits (1907), Expect = 0.0
 Identities = 392/631 (62%), Positives = 473/631 (74%), Gaps = 5/631 (0%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  98.5% aligned
Score =  158 bits (399), Expect = 2e-39
Identities = 121/365 (33%), Positives = 185/365 (50%), Gaps = 35/365 (9%)

smart00387, HATPase_c, Histidine kinase-like ATPases; Histidine kinase-, 
DNA gyrase B-, phytochrome-like ATPases.
CD-Length = 112 residues,  99.1% aligned
Score =  114 bits (287), Expect = 3e-26
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 7/117 (5%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  109 bits (274), Expect = 1e-24
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 2/115 (1%)









   
Genomic Context:






   
Comment:


















    ReferenceID:833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17975




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37269




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:415_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:415
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
701
                           PA1611_tr
                           translation of PA1611
                           651
                           99.69
                           99.84
                           0
                           3248.0
     

     
     
31699
                           gb|AAG05000.1|AE004589_3
                           (AE004589) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
                           651
                           99.69
                           99.84
                           0
                           3248.0
     

     
     
31700
                           gb|AAN69754.1|AE016611_12
                           (AE016789) sensor histidine kinase/response regulator [Pseudomonas putida KT2440]
                           663
                           63.04
                           76.01
                           32
                           2071.0
     

     
     
31701
                           gb|AAO55728.1|
                           (AE016863) sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           658
                           60.33
                           72.94
                           24
                           1918.0
     

     
     
31710
                           gb|AAK24472.1|
                           (AE005918) sensory box histidine kinase/response regulator [Caulobacter crescentus CB15]
                           713
                           30.99
                           46.42
                           138
                           771.0
     

     






      

          
GC ORFID: 43417How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1611Glimmer Score: 

          
Start: 1065963Stop: 1064008

          
Length: 1956


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1611 translation of PA1611Homolog Bit Score 1255.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene424 (ORF: BLASTX 755.0), t_PA1611 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGCGCCACGGCTGGGACATCCGTACCCGCATGCTGGCGATTAGCCTGGGCCCGGCGCTGCTGCTG 
ACCCTGTTGCTCACCGCCTACTTCACCTACTCGCGCCTGCAGGACCTGCGCCAGGAACTGACCCATACCGGC 
CAGTTGATCGCCGACCAGTTGGCGCCGGCCGCCGAATACGGCGTGATCGCCGGCAACACGCCCGTGCTGCAG 
AAGCTGCTGCAGGCCACCCTCGACACCCCGCATGTGCGCTTCATCGAGGTACGCGACCGCAACGACAATATC 
CTGGTGTACGTCGAACAGTTGTCCGGCGCGTTGCAGAACGCCGCGCCGATCGACATCTTCCACTCCACCATC 
CAGCGCCAGCGCATCGCCCTGGCCAGCGACCCGCTGCTGGACGGCGCCAGCGAAGGCGACGGCCAGTCCGGC 
GAGGACTACCTCGGCCGGGTGGTGGTCGGCATGTCCAACGACGCCTTCAGCCAGCGGCAACAGGAAATCCTC 
CTGAAGGCCGCCCTGCTGGCCGCCTTCGCCCTGATCCTCACCTTCCTCGTCGCGCGCCGCCTGGCGCAGCGC 
CTGTCGGCGCCGATCAGTACCATGGGCCAGGCGGTCGAGGCGATCCAGAGCGGCGACTACAAGACCAGCCTG 
CCGATCCTCGACGACGGCGAGATCGGCGACCTGGCCCGTCACATCAACAATCTCGCCAGCGGGCTGGACCGC 
GCGAGCCGGGAACAGGAACAGGCGATCGGCCAATTGATCAGCGCCCGCGAGGAAGCGGAGCAGGCGAACCGG 
GCGAAGTCCGACTTCCTGGCGATGATGAGCCACGAGCTTCGCACCCCGATGAACGGCGTGCTGGGCATGCTG 
CAACTGCTGGAAACCACCGAGCAGACCCGCGAACAGGCCGAGTACACGGCGCTGGCCACCGAGTCCACCGAA 
CACCTGCTGAAGGTCATCAACGACATTCTCGATTTCTCAAGGATCGAACGCGGCGCGCTGGAACTGGAGTGC 
ATTCCCTTCAACCTGCTGGAACTGGTGCAAGGCTCCGCCCTGGTGTTCCAGCACAGCGCCCAGCAACGCGGA 
CTGGCGCTGGAATTGCAGATCCAGGCCGGCCTGGAGAATATCGAGGTCTGCGGCGATCCGACGCGTATCCGA 
CAGATCCTGGTGAATCTGCTGGGTAATGCGCTGAAATTCACCGAGGAAGGCGCCATCCATCTCAGCCTGGAG 
TGGCAGGCGCTCGATCACGACGTACTGTGGCTGACCTGCGCGGTGCACGACAGCGGCATCGGCATCTCGCCG 
GAACGCCTGGAACATATGTTCGACGCCTTCCAGCAGGCGGATTCGTCGATTTCCCGGCGCTACGGCGGCACC 
GGGCTCGGCCTGGCGATCGCCAGGACCCTGGCGGAACGGATGGGCGGCACCCTGCAGGCAGAGAGCAAGGAA 
GGCTCGGGATCGACCTTCACCCTGGAGATTCCGCTGCCCTTCCAGCAGTCGCCGGCGCACCGGCAGCAGGCC 
GCTGGCGACGCCGCCCCGATTGCCGCCGGTCAGGAAATCCTCCTGGTCGAGGACAATCCGGTGAACCAGACA 
GTCATAGAAGCCATGTTGCGCAGCCTCGGCTATCGCGTCACCCTGGTCGCCGACGGTATCCAGGCGGTACGC 
AGCGCCGAGCGCCAGCGCTACGACGCGATCCTGATGGACTGCCGCCTGCCGGTGCTCGACGGCTACTCGGCG 
ACACGGGAAATCAGGGCCCAGGAGAACGGCCGGCGGGTACCGATCATCGCCCTGACCGCCAACGCCCTGCAG 
GGCGATCGGGAGAACTGCCTGCAGGCGGGAATGAACGATTACCTGGCCAAGCCATTCAAACGGGCGGAATTG 
CAACGCATACTGCAACGCTGGATCGGCTCGCAGCCGGAACGCCCCGTGACGTCGAACGAAACCGGACGAGGG 
GAGCCGGAATGA