ViewGene
Locus Name:
GeneID:
Location:

GeneID:4144
TrivialName: PA14_61650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61650
PAO1 Ortholog Locus:PA4661
Sequence Length:522
Protein Length:173
Start: 5501923
Stop: 5501402
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08048.1|AE004880_4 (AE004880) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 173/173 (100%), Positives = 173/173 (100%)
Sequence:
ATGAAGAAACTACTTCCGCTGGCCGTTCTGGCCGCACTTTCCTCCGTCCACGTGGCCTCCGCCCAGGCGGCG
GACGTCTCGGCCGCCGTCGGTGCGACCGGCCAGTCGGGCATGACCTATCGCCTGGGCCTGAGCTGGGATTGG
GACAAGAGCTGGTGGCAGACCTCCACCGGGCGCCTGACCGGCTACTGGGATGCGGGCTACACCTATTGGGAA
GGTGGCGATGAAGGCGCCGGCAAGCATTCGCTGTCGTTCGCTCCGGTATTCGTCTACGAGTTCGCCGGCGAC
TCGATCAAGCCATTCATCGAGGCCGGTATCGGCGTGGCGGCGTTCTCCGGCACCCGTGTCGGCGACCAGAAC
CTGGGTTCCTCCCTGAACTTCGAAGACCGCATCGGCGCCGGCCTGAAGTTCGCCAACGGCCAGTCGGTCGGC
GTTCGGGCGATCCACTATTCCAACGCCGGCCTGAAACAGCCGAACGACGGTATTGAGTCCTACAGCCTGTTC
TACAAGATCCCGATCTAG
Translation:
MKKLLPLAVLAALSSVHVASAQAADVSAAVGATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWE
GGDEGAGKHSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVG
VRAIHYSNAGLKQPNDGIESYSLFYKIPI*
AnnotationID:4151GeneID:4144
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 12:12:42
Gene Name:pagL
Confidence Code:1
GeneProduct:Lipid A 3-O-deacylase
Cell Localization:()
Synonyms:PA4661
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84323303|ref|ZP_00971376.1|  hypothetical protein Paer2_01005383 [Pseudomonas aeruginosa 2192]
Length=156

 Score =  323 bits (828),  Expect = 2e-87
 Identities = 155/156 (99%), Positives = 156/156 (100%), Gaps = 0/156 (0%)

gi|26987473|ref|NP_742898.1|  hypothetical protein PP0737 [Pseudomonas putida KT2440]
 gi|24982137|gb|AAN66362.1|  conserved hypothetical protein [Pseudomonas putida KT2440]
Length=175

 Score =  242 bits (618),  Expect = 3e-63
 Identities = 117/173 (67%), Positives = 134/173 (77%), Gaps = 1/173 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8290




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25433




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38268




  
Author/Investigator(s):
        Geurtsen J, Steeghs L, Hove JT, van der Ley P, Tommassen J.





  
Title:
        Dissemination of lipid A deacylases (pagL) among gram-negative bacteria: identification of active-site histidine and serine residues




  
PubMed:
        15611102


MedLine:
        




    
Source:
J Biol Chem. 2005 Mar 4;280(9):8248-59. Epub 2004 Dec 20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4144
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6400
                           PA4661_tr
                           translation of PA4661
                           173
                           99.99
                           99.99
                           0
                           909.0
     

     
     
175480
                           gb|AAG08048.1|AE004880_4
                           (AE004880) hypothetical protein PA4661 [Pseudomonas aeruginosa PAO1]
                           173
                           99.99
                           99.99
                           0
                           909.0
     

     
     
175481
                           gb|AAN66362.1|AE016264_6
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           176
                           66.47
                           76.13
                           4
                           620.0
     

     
     
175482
                           gb|AAN68762.1|AE016508_3
                           (AE016785) conserved hypothetical protein [Pseudomonas putida KT2440]
                           223
                           49.32
                           59.19
                           51
                           581.0
     

     






      

          
GC ORFID: 47146How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4661Glimmer Score: 

          
Start: 4765603Stop: 4765082

          
Length: 522


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4661 translation of PA4661Homolog Bit Score 354.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4300 (ORF: BLASTX 221.0), t_PA4661 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAAACTACTTCCGCTGGCCGTTCTGGCCGCACTTTCCTCCGTCCACGTGGCCTCCGCCCAGGCGGCG 
GACGTCTCGGCCGCCGTCGGTGCGACCGGCCAGTCGGGCATGACCTATCGCCTGGGCCTGAGCTGGGATTGG 
GACAAGAGCTGGTGGCAGACCTCCACCGGGCGCCTGACCGGCTACTGGGATGCGGGCTACACCTATTGGGAA 
GGTGGCGATGAAGGCGCCGGCAAGCATTCGCTGTCGTTCGCTCCGGTATTCGTCTACGAGTTCGCCGGCGAC 
TCGATCAAGCCATTCATCGAGGCCGGTATCGGCGTGGCGGCGTTCTCCGGCACCCGTGTCGGCGACCAGAAC 
CTGGGTTCCTCCCTGAACTTCGAAGACCGCATCGGCGCCGGCCTGAAGTTCGCCAACGGCCAGTCGGTCGGC 
GTTCGGGCGATCCACTATTCCAACGCCGGCCTGAAACAGCCGAACGACGGTATTGAGTCCTACAGCCTGTTC 
TACAAGATCCCGATCTAG