ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4078

TrivialName: PA14_06790

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_06790

PAO1 Ortholog Locus: PA0521

Sequence Length: 528

Protein Length: 175

Start: 591110

Stop: 591637

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03910.1|AE004489_2 (AE004489) probable cytochrome c oxidase subunit [Pseudomonas aeruginosa PAO1] Identities = 175/175 (100%), Positives = 175/175 (100%)

Sequence:

ATGTGGTTCTTCATCCTCGCCGAACTCAGCGTGTTCAGCCTGCTGCTGCTGGCGTTCGCCGGCGCCCAGGCC
TGGCAGCCGGAGCTGTTCCGTGCCGGCCGGGAGCAACTGGATAGCCGCTGGGGCCTGTTGCTGACCGTGGCC
CTGCTCAGCTCCGGCTGGCTCGCCGCGCTGGCGGTGCATGCGGTGCGCCGCGGACGGCCGCGCCAGGCGAGC
GGCTGGTTGCTGGCGGCGCTGCTGCTGGCGCTGGTCTACGTCGGCCTGAAGCTGCACGAGTACGGGCGGCTC
GCCGATCTCGGCCTGGACATCGAGCACGACACTTTCTTCACCCTCTACTGGTGCCTGACCGGCTTCCATTTC
CTCCACGTCCTGCTCGGCCTGCTGATCCTCGGCTGGCTGGCGCAGGCCTGCTGGCGCCGGTGTTATACGCCG
CAGGCTTGCTCGGGACTGGAGTCGGGAGTGCTCTACTGGCACATGGTCGACCTGGTCTGGGTGCTGCTGTTC
CCGCTGGTCTACGTCCTGCAATGA

Translation:

MWFFILAELSVFSLLLLAFAGAQAWQPELFRAGREQLDSRWGLLLTVALLSSGWLAALAVHAVRRGRPRQAS
GWLLAALLLALVYVGLKLHEYGRLADLGLDIEHDTFFTLYWCLTGFHFLHVLLGLLILGWLAQACWRRCYTP
QACSGLESGVLYWHMVDLVWVLLFPLVYVLQ*

AnnotationID:4085 GeneID:4078

AnnotatorUID: diggins

Modification Date/Time: 2004-08-15 19:07:38

Gene Name:

Confidence Code: 3

GeneProduct: cytochrome c oxidase subunit

Cell Localization: ()

Synonyms: nirO

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (12) Energy metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAG34379.1|AF197466_2 (AF197466) NirO [Pseudomonas fluorescens]
          Length = 175

 Score =  224 bits (571), Expect = 2e-58
 Identities = 113/174 (64%), Positives = 133/174 (76%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:8158

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25301

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33829

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4078_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4078

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6321 PA0521_tr translation of PA0521 175 99.99 99.99 0 933.0

173680 gb|AAG03910.1|AE004489_2 (AE004489) probable cytochrome c oxidase subunit [Pseudomonas aeruginosa PAO1] 175 99.99 99.99 0 933.0

173681 dbj|BAA07124.1| (D37883) ORF2; similar to subunit III of cytochrome c oxidase [Pseudomonas aeruginosa] 175 99.99 99.99 0 933.0

173682 emb|CAA98149.1| (Z73914) ORF175 protein [Pseudomonas stutzeri] 175 66.85 77.71 0 584.0

173683 gb|AAG34379.1|AF197466_2 (AF197466) NirO [Pseudomonas fluorescens] 175 64.57 76.00 0 571.0

GC ORFID: `47080`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0521`	Glimmer Score:
Start: `6392452`	Stop: `6392979`
Length: `528`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0521 translation of PA0521`	Homolog Bit Score `363.0`
Other Homologs: `t_PA0521 (ORF: GLIMMER)`
GC ORF Sequence
ATGTGGTTCTTCATCCTCGCCGAACTCAGCGTGTTCAGCCTGCTGCTGCTGGCGTTCGCCGGCGCCCAGGCC TGGCAGCCGGAGCTGTTCCGTGCCGGCCGGGAGCAACTGGATAGCCGCTGGGGCCTGTTGCTGACCGTGGCC CTGCTCAGCTCCGGCTGGCTCGCCGCGCTGGCGGTGCATGCGGTGCGCCGCGGACGGCCGCGCCAGGCGAGC GGCTGGTTGCTGGCGGCGCTGCTGCTGGCGCTGGTCTACGTCGGCCTGAAGCTGCACGAGTACGGGCGGCTC GCCGATCTCGGCCTGGACATCGAGCACGACACTTTCTTCACCCTCTACTGGTGCCTGACCGGCTTCCATTTC CTCCACGTCCTGCTCGGCCTGCTGATCCTCGGCTGGCTGGCGCAGGCCTGCTGGCGCCGGTGTTATACGCCG CAGGCTTGCTCGGGACTGGAGTCGGGAGTGCTCTACTGGCACATGGTCGACCTGGTCTGGGTGCTGCTGTTC CCGCTGGTCTACGTCCTGCAATGA