ViewGene
Locus Name:
GeneID:
Location:

GeneID:4074
TrivialName: PA14_20440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20440
PAO1 Ortholog Locus:PA3373
Sequence Length:558
Protein Length:185
Start: 1757597
Stop: 1758154
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06761.1|AE004759_8 (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 185/185 (100%), Positives = 185/185 (100%)
Sequence:
ATGACAGGCAGACTGATTTATCTGATGGGGCCTTCCGGCTCGGGCAAGGACAGCCTGTTGCAGGCCGCGCGC
GAGCCCCTGGCGCTGCGCGGCTGCCGTATCGTGCGGCGGGTGATCACGCGCTCCGCGGAAGCGGTGGGGGAG
GACGCCCAGGCGGTGACCCCGGCGCAATTCGACACCCTCGAGCGGGCCTCGGCGTTCGCCATGAGCTGGCGC
GCCAACGGCCTTTGCTATGGCATCCCAGTGCAGATCGACGAGTGGCTGGCGCAGGGCTACGACGTGCTGGTG
AACGGCTCGCGCGGCTACCTGGCGCAGGCCCGCCGGCGCTATCCGGATCTGCTCGCGGTCCTGCTCGGGGTG
AAACCCGAGGTGCTGCGCCAGCGCCTGCTGGCGCGCGGCCGGGAAAGCCCCGAGGAAATCGAGGCGCGCCTG
GCGCGCAACGCCGAGTTCGCCGCCGGCCTGGAGGGCCCGCTGTTCCAACTGGACAACTCCGGTGACCTCGAC
GACACGCTACGCAGCCTCCTGGCCCGTCTCGGCAGCGACCGCGCATGCGCCTGA
Translation:
MTGRLIYLMGPSGSGKDSLLQAAREPLALRGCRIVRRVITRSAEAVGEDAQAVTPAQFDTLERASAFAMSWR
ANGLCYGIPVQIDEWLAQGYDVLVNGSRGYLAQARRRYPDLLAVLLGVKPEVLRQRLLARGRESPEEIEARL
ARNAEFAAGLEGPLFQLDNSGDLDDTLRSLLARLGSDRACA*
AnnotationID:4081GeneID:4074
AnnotatorUID: danlee
Modification Date/Time: 2005-07-29 14:02:38
Gene Name:phnN
Confidence Code:3
GeneProduct:ATP-binding component of phosphonate transport
Cell Localization:()
Synonyms:PA3373
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:HisP-like nucleotide binding protein (ATP-binding protein), PhnN
Functional Category Confidence Code:5
COGs:cd00071,COG3709
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56071.1| (AE016865) ATP-binding protein PhnN [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 188

 Score =  219 bits (558), Expect = 6e-57
 Identities = 115/188 (61%), Positives = 140/188 (74%), Gaps = 3/188 (1%)

>gb|AAA96993.1| (U14003) HisP-like nucleotide binding protein (ATP-binding protein)
           [Escherichia coli]
          Length = 185

 Score =  143 bits (361), Expect = 5e-34
 Identities = 93/190 (48%), Positives = 113/190 (59%), Gaps = 12/190 (6%)

>emb|CAC92693.1| (AJ414157) PhnN protein [Yersinia pestis CO92]
          Length = 193

 Score =  136 bits (343), Expect = 6e-32
 Identities = 81/179 (45%), Positives = 103/179 (57%), Gaps = 2/179 (1%)






 
Structural Features:
cd00071, GuKc, Guanylate kinase homologues
CD-Length = 182 residues, 100.0% aligned
Score =  117 bits (294), Expect = 1e-27
Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 14/187 (7%)

COG3709, Uncharacterized component of phosphonate metabolism 
[Inorganic ion transport and metabolism]
CD-Length = 192 residues,  95.3% aligned
Score =  237 bits (606), Expect = 7e-64
Identities = 107/184 (58%), Positives = 126/184 (68%), Gaps = 2/184 (1%)









   
Genomic Context:






   
Comment:


















    ReferenceID:8150




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25293




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32189




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4074_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4074
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6317
                           PA3373_tr
                           translation of PA3373
                           185
                           99.99
                           99.99
                           0
                           932.0
     

     
     
173608
                           gb|AAG06761.1|AE004759_8
                           (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           185
                           99.99
                           99.99
                           0
                           932.0
     

     
     
173610
                           gb|AAO56071.1|
                           (AE016865) ATP-binding protein PhnN [Pseudomonas syringae pv. tomato str. DC3000]
                           188
                           61.70
                           75.00
                           3
                           561.0
     

     
     
173609
                           gb|AAN70044.1|AE016643_5
                           (AE016790) guanylate kinase [Pseudomonas putida KT2440]
                           199
                           58.29
                           67.33
                           14
                           555.0
     

     
     
173614
                           gb|AAA24353.1|
                           (J05260) HisP-like nucleotide binding protein (phnN) [Escherichia coli]
                           191
                           48.69
                           59.16
                           12
                           373.0
     

     






      

          
GC ORFID: 47076How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3373Glimmer Score: 

          
Start: 3196335Stop: 3195778

          
Length: 558


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3373 translation of PA3373Homolog Bit Score 363.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1227 (ORF: BLASTX 229.0), t_PA3373 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAGGCAGACTGATTTATCTGATGGGGCCTTCCGGCTCGGGCAAGGACAGCCTGTTGCAGGCCGCGCGC 
GAGCCCCTGGCGCTGCGCGGCTGCCGTATCGTGCGGCGGGTGATCACGCGCTCCGCGGAAGCGGTGGGGGAG 
GACGCCCAGGCGGTGACCCCGGCGCAATTCGACACCCTCGAGCGGGCCTCGGCGTTCGCCATGAGCTGGCGC 
GCCAACGGCCTTTGCTATGGCATCCCAGTGCAGATCGACGAGTGGCTGGCGCAGGGCTACGACGTGCTGGTG 
AACGGCTCGCGCGGCTACCTGGCGCAGGCCCGCCGGCGCTATCCGGATCTGCTCGCGGTCCTGCTCGGGGTG 
AAACCCGAGGTGCTGCGCCAGCGCCTGCTGGCGCGCGGCCGGGAAAGCCCCGAGGAAATCGAGGCGCGCCTG 
GCGCGCAACGCCGAGTTCGCCGCCGGCCTGGAGGGCCCGCTGTTCCAACTGGACAACTCCGGTGACCTCGAC 
GACACGCTACGCAGCCTCCTGGCCCGTCTCGGCAGCGACCGCGCATGCGCCTGA