ViewGene
Locus Name:
GeneID:
Location:

GeneID:4053
TrivialName: PA14_56810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56810
PAO1 Ortholog Locus:PA4369
Sequence Length:573
Protein Length:190
Start: 5061551
Stop: 5060979
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07757.1|AE004852_10 (AE004852) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/190 (100%), Positives = 190/190 (100%)
Sequence:
ATGAGTCTGACCGCTATCGCTTTCTGGGTTGTCCTGCTGCTGCTCGCCGGCTACGCGGTGGTGCTCTACAAC
GGCCTGGTACGGCTGAAGCACGCCGTGGGCAAGGCCTGGGCCAACATCGACGTGCTCCTCAAGCAGCGCCAT
GACGAGCTGCCGAAGCTGGTCGAGGCCTGCAAGCAATACATGCAGCACGAGCGCGCCACCCTGGAGCGGGTC
ATCGCCGCCCGCAACGCCGTCGCCAGCGCCCGCGAGCGCGCCGACGTGAATGCCCTTGGCAAGGCCGAGAGC
GGCCTGCGCGCCGGCCTGGGGCAGCTCTTCGCGCTGGCTGAGAACTACCCGCAGCTCAAGGCCAACGAAAGT
TTCCAGTTCCTTTCCCAGCGCATCAGCGGCCTGGAGAACGGGATCGCCGATCGCCGCGAGCTGTACAACGAG
GCGGTGAACCTGAACAACGTGCGCATCGAGCAATTTCCCGACCTGCTGATCGCCCGTGTCGCTGGCTTCAAG
GCCGCCGAGCTGTTGCAGTTCAGCGAGGCGGAGAAGGCCGACGTCGATCTCAAGGCCCTGTTCGGCTGA
Translation:
MSLTAIAFWVVLLLLAGYAVVLYNGLVRLKHAVGKAWANIDVLLKQRHDELPKLVEACKQYMQHERATLERV
IAARNAVASARERADVNALGKAESGLRAGLGQLFALAENYPQLKANESFQFLSQRISGLENGIADRRELYNE
AVNLNNVRIEQFPDLLIARVAGFKAAELLQFSEAEKADVDLKALFG*
AnnotationID:4060GeneID:4053
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 06:06:35
Gene Name:
Confidence Code:3
GeneProduct:putative lemA-like protein
Cell Localization:()
Synonyms:PA4369
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04011
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK99966.1| (AE008489) Cytoplasmic membrane protein [Streptococcus pneumoniae
           R6]
          Length = 186

 Score =  134 bits (337), Expect = 3e-31
 Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 6/176 (3%)

>gb|AAK75388.1| (AE007427) lemA protein [Streptococcus pneumoniae TIGR4]
          Length = 186

 Score =  134 bits (337), Expect = 3e-31
 Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 6/176 (3%)








 
Structural Features:
pfam04011, LemA, LemA family.
CD-Length = 186 residues, 100.0% aligned
Score =  217 bits (554), Expect = 1e-57
Identities = 82/188 (43%), Positives = 108/188 (57%), Gaps = 2/188 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8108




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17118




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4053_cdd.html


    		




 
URL:

















    ReferenceID:25251




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4053
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6295
                           PA4369_tr
                           translation of PA4369
                           190
                           99.99
                           99.99
                           0
                           940.0
     

     
     
173307
                           gb|AAG07757.1|AE004852_10
                           (AE004852) hypothetical protein PA4369 [Pseudomonas aeruginosa PAO1]
                           190
                           99.99
                           99.99
                           0
                           940.0
     

     
     
173308
                           emb|CAD84193.1|
                           (BX321857) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           195
                           59.48
                           75.38
                           8
                           557.0
     

     
     
173311
                           dbj|BAC47759.1|
                           (AP005944) bll2494 [Bradyrhizobium japonicum USDA 110]
                           212
                           41.03
                           50.94
                           48
                           332.0
     

     
     
173316
                           emb|CAC45425.1|
                           (AL591785) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
                           191
                           39.79
                           54.45
                           10
                           322.0
     

     






      

          
GC ORFID: 47055How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4369Glimmer Score: 

          
Start: 4325227Stop: 4324655

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4369 translation of PA4369Homolog Bit Score 366.0

          
Other Homologs:  t_PA4369 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCTGACCGCTATCGCTTTCTGGGTTGTCCTGCTGCTGCTCGCCGGCTACGCGGTGGTGCTCTACAAC 
GGCCTGGTACGGCTGAAGCACGCCGTGGGCAAGGCCTGGGCCAACATCGACGTGCTCCTCAAGCAGCGCCAT 
GACGAGCTGCCGAAGCTGGTCGAGGCCTGCAAGCAATACATGCAGCACGAGCGCGCCACCCTGGAGCGGGTC 
ATCGCCGCCCGCAACGCCGTCGCCAGCGCCCGCGAGCGCGCCGACGTGAATGCCCTTGGCAAGGCCGAGAGC 
GGCCTGCGCGCCGGCCTGGGGCAGCTCTTCGCGCTGGCTGAGAACTACCCGCAGCTCAAGGCCAACGAAAGT 
TTCCAGTTCCTTTCCCAGCGCATCAGCGGCCTGGAGAACGGGATCGCCGATCGCCGCGAGCTGTACAACGAG 
GCGGTGAACCTGAACAACGTGCGCATCGAGCAATTTCCCGACCTGCTGATCGCCCGTGTCGCTGGCTTCAAG 
GCCGCCGAGCTGTTGCAGTTCAGCGAGGCGGAGAAGGCCGACGTCGATCTCAAGGCCCTGTTCGGCTGA