ViewGene
Locus Name:
GeneID:
Location:

GeneID:4037
TrivialName: PA14_21980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21980
PAO1 Ortholog Locus:PA3248
Sequence Length:552
Protein Length:183
Start: 1911754
Stop: 1912305
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06636.1|AE004747_9 (AE004747) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 181/183 (98%), Positives = 181/183 (98%)
Sequence:
ATGTTCATACTGCCGATTTCGTCCGACCTGCACCTGGAGCTGCTCGACCAGCCGCGCGCCGAGGAACTGTTC
CGCCTGGTGCGCGCCAACAGCGAGCACCTGGCGCCCTGGATGCCGTGGGTGCCACTGACGCAGAGCGCGGAC
GATACCCGCCGTTTCATTGGCGAAGGCCAGCGGTTGTGGGCGGAGCGCAGGAGTTGCCGCTGCGGGATCGTC
GAATCCGGATGCCTGGTCGGCGTCATCGACCTGCACGATTTCACCGAGGACAGCCGCAGCGCCAGCATCGGC
TACTGGCTGGCGGCGTCCGCGCAAGGGCGCGGGCTGCTCGCCAGGGCGCTGGGGAAGACGATCGAGCAGGGT
TTCCTTGGCTACGACCGGCAGCGCCTGGTGATCCGCTGTTCCACCGAGAACCTGCGCAGCCAGCGCGCCGCC
GAGCGCCAGGGCTTCCGGCGCGACGGAGTGATCCGGGCCAACGAGATCATCGCCGGGCGTGCCCACGACCAT
GCGATCTACACGCTGTTGCGCAGCGAATGGCACGCTGCGCACGCCTGA
Translation:
MFILPISSDLHLELLDQPRAEELFRLVRANSEHLAPWMPWVPLTQSADDTRRFIGEGQRLWAERRSCRCGIV
ESGCLVGVIDLHDFTEDSRSASIGYWLAASAQGRGLLARALGKTIEQGFLGYDRQRLVIRCSTENLRSQRAA
ERQGFRRDGVIRANEIIAGRAHDHAIYTLLRSEWHAAHA*
AnnotationID:4044GeneID:4037
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:40
Gene Name:
Confidence Code:3
GeneProduct:putative ribosomal-protein-serine acetyltransferase
Cell Localization:()
Synonyms:PA3248
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1670
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP11590.1| (AE017013) Ribosomal-protein-serine acetyltransferase [Bacillus
           cereus ATCC 14579]
          Length = 182

 Score =  129 bits (324), Expect = 9e-30
 Identities = 65/178 (36%), Positives = 101/178 (56%)

>gb|AAP28621.1| (AE017039) ribosomal-protein-serine acetyltransferase, putative
           [Bacillus anthracis str. Ames]
          Length = 184

 Score =  125 bits (314), Expect = 1e-28
 Identities = 62/178 (34%), Positives = 100/178 (56%)






 
Structural Features:
COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins 
[Translation, ribosomal structure and biogenesis]
CD-Length = 187 residues,  94.1% aligned
Score = 87.7 bits (216), Expect = 8e-19
Identities = 52/188 (27%), Positives = 71/188 (37%), Gaps = 8/188 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8076




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38098




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4037_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4037
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6277
                           PA3248_tr
                           translation of PA3248
                           183
                           98.90
                           98.90
                           0
                           947.0
     

     
     
173034
                           gb|AAG06636.1|AE004747_9
                           (AE004747) hypothetical protein PA3248 [Pseudomonas aeruginosa PAO1]
                           183
                           98.90
                           98.90
                           0
                           947.0
     

     






      

          
GC ORFID: 47039How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3248Glimmer Score: 

          
Start: 3042177Stop: 3041626

          
Length: 552


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3248 translation of PA3248Homolog Bit Score 369.0

          
Other Homologs:  t_PA3248 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCATACTGCCGATTTCGTCCGACCTGCACCTGGAGCTGCTCGACCAGCCGCGCGCCGAGGAACTGTTC 
CGCCTGGTGCGCGCCAACAGCGAGCACCTGGCGCCCTGGATGCCGTGGGTGCCACTGACGCAGAGCGCGGAC 
GATACCCGCCGTTTCATTGGCGAAGGCCAGCGGTTGTGGGCGGAGCGCAGGAGTTGCCGCTGCGGGATCGTC 
GAATCCGGATGCCTGGTCGGCGTCATCGACCTGCACGATTTCACCGAGGACAGCCGCAGCGCCAGCATCGGC 
TACTGGCTGGCGGCGTCCGCGCAAGGGCGCGGGCTGCTCGCCAGGGCGCTGGGGAAGACGATCGAGCAGGGT 
TTCCTTGGCTACGACCGGCAGCGCCTGGTGATCCGCTGTTCCACCGAGAACCTGCGCAGCCAGCGCGCCGCC 
GAGCGCCAGGGCTTCCGGCGCGACGGAGTGATCCGGGCCAACGAGATCATCGCCGGGCGTGCCCACGACCAT 
GCGATCTACACGCTGTTGCGCAGCGAATGGCACGCTGCGCACGCCTGA