ViewGene
Locus Name:
GeneID:
Location:

GeneID:3989
TrivialName: PA14_40220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40220
PAO1 Ortholog Locus:PA1878
Sequence Length:579
Protein Length:192
Start: 3583268
Stop: 3583846
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05267.1|AE004614_1 (AE004614) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/192 (98%), Positives = 190/192 (98%)
Sequence:
ATGTCCCTCGAACTGCTGAGCAACCGCCTCGAATTCCTCCGCGAAGCCGAACGCCTGAAAGACGTCCTGCGC
TCCGCGCACACCTCCTCCGGCCGCCCGGAAAGCACCGCCGAACATAGCTGGCGGCTGTGCCTGATGGCACTG
GCCTTCGAGGACCAACTGGCCGGCCTGGACCTCGGCAAGGTTCTGCGCATGTGCGTGGTCCACGACCTCGGC
GAAGCGATCCACGGCGACATCCCCGCCGTCGAGCAAGCCGCGCACCCGGACAAGGGCGAACAGGAACGCGCC
GACCTGTTGCAGCTGACCCGTCATCTGGACACGCCGCTGCGCGATCGCCTGCTCGCCCTGTGGGACGAATAC
GAGCGCGGCGAGACCGCCGAAGCCCTGGCAGTGAAAGCGCTGGACAAGCTGGAAACCCTGCTCCAGCACACC
CAGGGCGACAATCCGGCGGACTTCGACTATGCCTTCAACCTCGACTACGGCCGTCGCTATACCGACCGCGCA
CCGCTGTTCAAGACCCTGCGCGAGTTACTCGACGCCAGGACCCGACAGCGCCTCGCAGCTCGGCGCGACGCC
TAG
Translation:
MSLELLSNRLEFLREAERLKDVLRSAHTSSGRPESTAEHSWRLCLMALAFEDQLAGLDLGKVLRMCVVHDLG
EAIHGDIPAVEQAAHPDKGEQERADLLQLTRHLDTPLRDRLLALWDEYERGETAEALAVKALDKLETLLQHT
QGDNPADFDYAFNLDYGRRYTDRAPLFKTLRELLDARTRQRLAARRDA*
AnnotationID:3996GeneID:3989
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:45
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1878
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1896
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO35772.1| (AE015940) hydrolase (HAD superfamily) [Clostridium tetani E88]
          Length = 193

 Score =  124 bits (312), Expect = 2e-28
 Identities = 71/182 (39%), Positives = 103/182 (56%), Gaps = 4/182 (2%)

>gb|AAP08603.1| (AE017003) hydrolase (HAD superfamily) [Bacillus cereus ATCC 14579]
          Length = 200

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 5/145 (3%)








 
Structural Features:
COG1896, COG1896, Predicted hydrolases of HD superfamily 
CD-Length = 193 residues,  97.4% aligned
Score =  118 bits (297), Expect = 4e-28
Identities = 62/189 (32%), Positives = 85/189 (44%), Gaps = 8/189 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7980




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25123




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37046




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3989_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3989
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6226
                           PA1878_tr
                           translation of PA1878
                           192
                           98.43
                           98.95
                           0
                           971.0
     

     
     
172410
                           gb|AAG05267.1|AE004614_1
                           (AE004614) hypothetical protein PA1878 [Pseudomonas aeruginosa PAO1]
                           192
                           98.43
                           98.95
                           0
                           971.0
     

     
     
172411
                           emb|CAE25839.1|
                           (BX572594) Metal dependent phosphohydrolase [Rhodopseudomonas palustris CGA009]
                           197
                           53.80
                           68.52
                           5
                           551.0
     

     






      

          
GC ORFID: 46991How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1878Glimmer Score: 

          
Start: 1370642Stop: 1370064

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1878 translation of PA1878Homolog Bit Score 378.0

          
Other Homologs:  t_PA1878 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTCGAACTGCTGAGCAACCGCCTCGAATTCCTCCGCGAAGCCGAACGCCTGAAAGACGTCCTGCGC 
TCCGCGCACACCTCCTCCGGCCGCCCGGAAAGCACCGCCGAACATAGCTGGCGGCTGTGCCTGATGGCACTG 
GCCTTCGAGGACCAACTGGCCGGCCTGGACCTCGGCAAGGTTCTGCGCATGTGCGTGGTCCACGACCTCGGC 
GAAGCGATCCACGGCGACATCCCCGCCGTCGAGCAAGCCGCGCACCCGGACAAGGGCGAACAGGAACGCGCC 
GACCTGTTGCAGCTGACCCGTCATCTGGACACGCCGCTGCGCGATCGCCTGCTCGCCCTGTGGGACGAATAC 
GAGCGCGGCGAGACCGCCGAAGCCCTGGCAGTGAAAGCGCTGGACAAGCTGGAAACCCTGCTCCAGCACACC 
CAGGGCGACAATCCGGCGGACTTCGACTATGCCTTCAACCTCGACTACGGCCGTCGCTATACCGACCGCGCA 
CCGCTGTTCAAGACCCTGCGCGAGTTACTCGACGCCAGGACCCGACAGCGCCTCGCAGCTCGGCGCGACGCC 
TAG