ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3974

TrivialName: PA14_39040

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39040

PAO1 Ortholog Locus:

Sequence Length: 1371

Protein Length: 456

Start: 3482328

Stop: 3480958

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAB92989.1| (AL939118) putative WD-40 repeat protein [Streptomyces coelicolor A3(2)] Identities = 86/295 (29%), Positives = 112/295 (37%), Gaps = 60/295 (20%)

Sequence:

GTGCAGCAGCCATTGCGGGAAGTCCTGGCCCAGGCCCGCCGCCTTCAGGGCATCGAGCACGCCGAACGCCAG
GGAAACCAGCATCACCGGGGCGAGGATGCGCGTCGCCGAATGCCAGAGGCCGATGCAGAAGCTCAGCGCCAC
CAGCACGATGCAGGGCGGATAGATCGCGGTGAGCACCGGGATCGAGACCTGGATCAGCTTGGTCAGGCCGAG
GTTGGAAACGATGAAGGAGAACCCTGCCAGGATGATCACCAGGCTGCGGTAGGACAGCGGCAGGCGCTGGCA
GAAGTACTCGGCGCAGGCGCAGGTCAGGCCGACCGCGGTGACCAGGCAGGCCAGCGCGATAAGTCCCGCCAG
GAACGAGCTGCCGAGGCTGCCGAAGGTATGTTGCACGTAGGCATGCAGGACCGCCGCGCCGTTGCTGGCGTC
GGCGGCGATGGCATGGCTGCCGGCGCCGAGCCGGAACAGGCTGACGTAGACCAGCACCAGGCCGACGCCGGC
GATCAGCCCGGCGACGATGGCGTAGCGGGTGATCAGCCGCGGCGACTGCACGCCGCGGGAACGGATGGCGTT
GACGATGACGATGCCGAAGACCAGCGCGGCGAGGGTGTCCATGGTCAGGTAGCCGTTGACGAAACCCTGGGA
GAACGCGGCCTGGGTGTACTCCGGCTGGGCCGTGCCGATCGGGCCGGCGGGCCAGAGGAAGGCGGCGACGCC
GAGAATCGCCAGGGCGAGGATCTTCAGCGGGGCGAGGAAGCGTCCGACGGTGTCCAGCAGGCGACCGGGGTA
GAGGGAGATGGCCAGGGCGAGGAGGAAGTACGCCAGGCTGTAGACGAACAGCGCCGTGCCGCTCTCGCCGAG
CAGCGGCACCACGCCGACCTCGAAGGACACCGTGGCGGTGCGCGGAATGGCGAACAGCGGGCCGACCGCCAG
GTAGCAGACCGCCGCCAGCAGGCCGCCGGCATACCTGCCGATCGGATGGCTGAGGGCGTCGACCGAACCGCC
GACCTTGGCCAGGGCGATCACGGTGATCACCGGCAGCCCCACCGCGGTGATCAGGAAGCCCAGCGCCGCCAG
CCACACATGGGGGCCGGACTGCAAGCCGACGATGGGCGGGAAGATGATGTTGCCGGCCCCGACGAACAGGGC
AAAGGTCATAAAACCAAGCGCCAGGATGTCCCGGCCTTTCAAAGCGTTCATGCTGGAGAGGTACCGCGCTGC
TCGAGGAAATTCACAGAAGGGTTTCCCGGGGGGGTAGGGGAAACGGCACTCATCTGGATGGGACGAGCAGGG
GAGGCGGCCGCCGTCCTTGTGGGAGCCGGGCCGGAAACTTGGCATGCTAACGAAAATGCCGGGGTCGCGGGA
TAG

Translation:

MQQPLREVLAQARRLQGIEHAERQGNQHHRGEDARRRMPEADAEAQRHQHDAGRIDRGEHRDRDLDQLGQAE
VGNDEGEPCQDDHQAAVGQRQALAEVLGAGAGQADRGDQAGQRDKSRQERAAEAAEGMLHVGMQDRRAVAGV
GGDGMAAGAEPEQADVDQHQADAGDQPGDDGVAGDQPRRLHAAGTDGVDDDDAEDQRGEGVHGQVAVDETLG
ERGLGVLRLGRADRAGGPEEGGDAENRQGEDLQRGEEASDGVQQATGVEGDGQGEEEVRQAVDEQRRAALAE
QRHHADLEGHRGGARNGEQRADRQVADRRQQAAGIPADRMAEGVDRTADLGQGDHGDHRQPHRGDQEAQRRQ
PHMGAGLQADDGREDDVAGPDEQGKGHKTKRQDVPAFQSVHAGEVPRCSRKFTEGFPGGVGETALIWMGRAG
EAAAVLVGAGPETWHANENAGVAG*

AnnotationID:3981 GeneID:3974

AnnotatorUID: diggins

Modification Date/Time: 2004-06-24 20:08:25

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14980

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25093

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32753

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3974_cdd.html

URL:

GC ORFID: `46976`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `psyr_15may02_Scaffold1_revised_gene430`	Glimmer Score:
Start: `1471583`	Stop: `1472953`
Length: `1371`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `psyr_15may02_Scaffold1_revised_gene430 related to: gi\|586120\|sp\|Q07283\|TRHY_HUMAN Trichohyalin pir\|\|A45973 trichohyalin - human gb\|AAA65582.1\| (L09190) trichohyalin [Homo sapiens]`	Homolog Bit Score `381.0`
Other Homologs: `psyr_15may02_Scaffold1_revised_gene430 (ORF: GLIMMER)`
GC ORF Sequence
GTGCAGCAGCCATTGCGGGAAGTCCTGGCCCAGGCCCGCCGCCTTCAGGGCATCGAGCACGCCGAACGCCAG GGAAACCAGCATCACCGGGGCGAGGATGCGCGTCGCCGAATGCCAGAGGCCGATGCAGAAGCTCAGCGCCAC CAGCACGATGCAGGGCGGATAGATCGCGGTGAGCACCGGGATCGAGACCTGGATCAGCTTGGTCAGGCCGAG GTTGGAAACGATGAAGGAGAACCCTGCCAGGATGATCACCAGGCTGCGGTAGGACAGCGGCAGGCGCTGGCA GAAGTACTCGGCGCAGGCGCAGGTCAGGCCGACCGCGGTGACCAGGCAGGCCAGCGCGATAAGTCCCGCCAG GAACGAGCTGCCGAGGCTGCCGAAGGTATGTTGCACGTAGGCATGCAGGACCGCCGCGCCGTTGCTGGCGTC GGCGGCGATGGCATGGCTGCCGGCGCCGAGCCGGAACAGGCTGACGTAGACCAGCACCAGGCCGACGCCGGC GATCAGCCCGGCGACGATGGCGTAGCGGGTGATCAGCCGCGGCGACTGCACGCCGCGGGAACGGATGGCGTT GACGATGACGATGCCGAAGACCAGCGCGGCGAGGGTGTCCATGGTCAGGTAGCCGTTGACGAAACCCTGGGA GAACGCGGCCTGGGTGTACTCCGGCTGGGCCGTGCCGATCGGGCCGGCGGGCCAGAGGAAGGCGGCGACGCC GAGAATCGCCAGGGCGAGGATCTTCAGCGGGGCGAGGAAGCGTCCGACGGTGTCCAGCAGGCGACCGGGGTA GAGGGAGATGGCCAGGGCGAGGAGGAAGTACGCCAGGCTGTAGACGAACAGCGCCGTGCCGCTCTCGCCGAG CAGCGGCACCACGCCGACCTCGAAGGACACCGTGGCGGTGCGCGGAATGGCGAACAGCGGGCCGACCGCCAG GTAGCAGACCGCCGCCAGCAGGCCGCCGGCATACCTGCCGATCGGATGGCTGAGGGCGTCGACCGAACCGCC GACCTTGGCCAGGGCGATCACGGTGATCACCGGCAGCCCCACCGCGGTGATCAGGAAGCCCAGCGCCGCCAG CCACACATGGGGGCCGGACTGCAAGCCGACGATGGGCGGGAAGATGATGTTGCCGGCCCCGACGAACAGGGC AAAGGTCATAAAACCAAGCGCCAGGATGTCCCGGCCTTTCAAAGCGTTCATGCTGGAGAGGTACCGCGCTGC TCGAGGAAATTCACAGAAGGGTTTCCCGGGGGGGTAGGGGAAACGGCACTCATCTGGATGGGACGAGCAGGG GAGGCGGCCGCCGTCCTTGTGGGAGCCGGGCCGGAAACTTGGCATGCTAACGAAAATGCCGGGGTCGCGGGA TAG