ViewGene
Locus Name:
GeneID:
Location:

GeneID:3956
TrivialName: PA14_26340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26340
PAO1 Ortholog Locus:PA2916
Sequence Length:594
Protein Length:197
Start: 2296952
Stop: 2297545
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06304.1|AE004718_1 (AE004718) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGCAATCCCTCGTGCCCTTCCTGCTGTTCGCCGTCGTCGCCTCGATCACCCCCGGACCGACCAACATCCTG
GTCCTGAGCAACAGCCAGCGCCACGGCCTGGCCGCCGCCTGGCCGATCGTGCTCGGCGCCTGCGCGGCGGTG
GCGGCGCTGATCCTGCTGCTCGGGCTCGGCCTGGGCGAGCTGCTGCGGCGCCACCCGTTGCTCCAGCAGGGG
CTCGCCTGGCTTGGCGTCGGCTGGCTCAGCTACCTGGCCTGGAGCCTGTTCCGCAGCGCGGGCGGCATCGAC
GGCGCGGAGCCGCCGCGGCGCCTCGGCGTGCTCGGCGGCGCGGCGTTGCAACTGGTCAATCCCAAGGCCTGG
ATGATGGCCCTCGCCGCGCTGGCACTGTTCGCCGGGGAAGGCGCCGGACAGGCCGGGCGGATCGGCCTGCTG
GCATTGCTGTTCTTCCTGGTTTCGCTGCCGTGCCTGGCCAGTTGGGCCTTGCTCGGCGTCGGCAGCGCGCGG
CTGCTGCGCTCGCCGTCGCTGATGAAGCGCTTCAACCAGGGCATGGCGCTGTTGCTGCTGGCATCGGCCTGG
GCCGCCCTGCTGCTCTGA
Translation:
MQSLVPFLLFAVVASITPGPTNILVLSNSQRHGLAAAWPIVLGACAAVAALILLLGLGLGELLRRHPLLQQG
LAWLGVGWLSYLAWSLFRSAGGIDGAEPPRRLGVLGGAALQLVNPKAWMMALAALALFAGEGAGQAGRIGLL
ALLFFLVSLPCLASWALLGVGSARLLRSPSLMKRFNQGMALLLLASAWAALLL*
AnnotationID:3963GeneID:3956
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:37
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2916
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative threonine efflux protein
Functional Category Confidence Code:5
COGs:COG1280
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68041.1|AE016436_9 (AE016783) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 194

 Score =  196 bits (499), Expect = 5e-50
 Identities = 100/195 (51%), Positives = 140/195 (71%), Gaps = 4/195 (2%)








 
Structural Features:
COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:7914




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25057




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36135




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3956_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3956
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6194
                           PA2916_tr
                           translation of PA2916
                           197
                           99.99
                           99.99
                           0
                           987.0
     

     
     
171729
                           gb|AAG06304.1|AE004718_1
                           (AE004718) hypothetical protein PA2916 [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           987.0
     

     
     
171730
                           gb|AAN68041.1|AE016436_9
                           (AE016783) membrane protein, putative [Pseudomonas putida KT2440]
                           198
                           50.50
                           70.70
                           5
                           500.0
     

     






      

          
GC ORFID: 46958How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2916Glimmer Score: 

          
Start: 2656973Stop: 2656380

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2916 translation of PA2916Homolog Bit Score 384.0

          
Other Homologs:  t_PA2916 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATCCCTCGTGCCCTTCCTGCTGTTCGCCGTCGTCGCCTCGATCACCCCCGGACCGACCAACATCCTG 
GTCCTGAGCAACAGCCAGCGCCACGGCCTGGCCGCCGCCTGGCCGATCGTGCTCGGCGCCTGCGCGGCGGTG 
GCGGCGCTGATCCTGCTGCTCGGGCTCGGCCTGGGCGAGCTGCTGCGGCGCCACCCGTTGCTCCAGCAGGGG 
CTCGCCTGGCTTGGCGTCGGCTGGCTCAGCTACCTGGCCTGGAGCCTGTTCCGCAGCGCGGGCGGCATCGAC 
GGCGCGGAGCCGCCGCGGCGCCTCGGCGTGCTCGGCGGCGCGGCGTTGCAACTGGTCAATCCCAAGGCCTGG 
ATGATGGCCCTCGCCGCGCTGGCACTGTTCGCCGGGGAAGGCGCCGGACAGGCCGGGCGGATCGGCCTGCTG 
GCATTGCTGTTCTTCCTGGTTTCGCTGCCGTGCCTGGCCAGTTGGGCCTTGCTCGGCGTCGGCAGCGCGCGG 
CTGCTGCGCTCGCCGTCGCTGATGAAGCGCTTCAACCAGGGCATGGCGCTGTTGCTGCTGGCATCGGCCTGG 
GCCGCCCTGCTGCTCTGA