ViewGene
Locus Name:
GeneID:
Location:

GeneID:3954
TrivialName: PA14_47520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47520
PAO1 Ortholog Locus:PA1290
Sequence Length:594
Protein Length:197
Start: 4232596
Stop: 4233189
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04679.1|AE004558_8 (AE004558) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 196/197 (99%), Positives = 197/197 (100%)
Sequence:
ATGAATGTCAAGAGCAGGCAGCAGGAAAATGCCGAGGCGACCCGCGAGGCACTGCTGGAAAGCGCCCTCTCC
GCCTTCATCGAACATGGCTATGGCGGCGTCTCCATCGACGCCATCGCCCGCGAGGCGCGCGTGACCAAGGGC
GCGTTCTACCACCACTTCGGCAGCAAGCAGGAACTGCTCGCCGAATGCTACGAACGCCAGGTACGGACGATC
GCCGAGGACCTGGACAAGGTGCCGGCGCATGTCGACAAGTGGGCGGAGGCCGCCGCGCTGGCCGAGGCCTTC
ATCGACAGCGTGATGGCGCGCGGCAAGCGGCAACTGTCGCTGCAGGAGGTGATCACGGTCGTCGGCTGGGAG
CGATGGAAACGCATCGACTCGCGCCACACGCTGCGCTACGTCGGGCGCCTGGTGGACGAACTGGCGGCCAGT
GGCGAACTCAAGGACTACCGCCGGGAAACCCTGGTCGGCCAGCTCTACGGCTTCCTTACCCAGGCCGCGATG
AGTCTTCGCGATGCACGCAACAAGCGGCAAGCGGCCAATGAAGTGAAAGCCATCATCCGCGACTTCCTCTAC
AGCCTGCGCAGGGGCTGA
Translation:
MNVKSRQQENAEATREALLESALSAFIEHGYGGVSIDAIAREARVTKGAFYHHFGSKQELLAECYERQVRTI
AEDLDKVPAHVDKWAEAAALAEAFIDSVMARGKRQLSLQEVITVVGWERWKRIDSRHTLRYVGRLVDELAAS
GELKDYRRETLVGQLYGFLTQAAMSLRDARNKRQAANEVKAIIRDFLYSLRRG*
AnnotationID:3961GeneID:3954
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 20:08:12
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1290
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL08446.1|AF326777_21 (AF326777) putative transcriptional regulator TetC [Shigella
           flexneri 2a]
          Length = 197

 Score =  120 bits (302), Expect = 4e-27
 Identities = 64/195 (32%), Positives = 108/195 (55%)

>gb|AAF69921.1|AF250878_82 (AF250878) tetracycline transcriptional regulator [Salmonella
           typhi]
          Length = 222

 Score =  120 bits (302), Expect = 4e-27
 Identities = 64/195 (32%), Positives = 108/195 (55%)






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 62.3 bits (152), Expect = 3e-11
Identities = 23/47 (48%), Positives = 31/47 (65%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7910




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25053




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37462




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3954_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3954
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6192
                           PA1290_tr
                           translation of PA1290
                           197
                           99.49
                           99.99
                           0
                           987.0
     

     
     
171681
                           gb|AAG04679.1|AE004558_8
                           (AE004558) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           197
                           99.49
                           99.99
                           0
                           987.0
     

     






      

          
GC ORFID: 46956How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1290Glimmer Score: 

          
Start: 721313Stop: 720720

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1290 translation of PA1290Homolog Bit Score 384.0

          
Other Homologs:  t_PA1290 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGTCAAGAGCAGGCAGCAGGAAAATGCCGAGGCGACCCGCGAGGCACTGCTGGAAAGCGCCCTCTCC 
GCCTTCATCGAACATGGCTATGGCGGCGTCTCCATCGACGCCATCGCCCGCGAGGCGCGCGTGACCAAGGGC 
GCGTTCTACCACCACTTCGGCAGCAAGCAGGAACTGCTCGCCGAATGCTACGAACGCCAGGTACGGACGATC 
GCCGAGGACCTGGACAAGGTGCCGGCGCATGTCGACAAGTGGGCGGAGGCCGCCGCGCTGGCCGAGGCCTTC 
ATCGACAGCGTGATGGCGCGCGGCAAGCGGCAACTGTCGCTGCAGGAGGTGATCACGGTCGTCGGCTGGGAG 
CGATGGAAACGCATCGACTCGCGCCACACGCTGCGCTACGTCGGGCGCCTGGTGGACGAACTGGCGGCCAGT 
GGCGAACTCAAGGACTACCGCCGGGAAACCCTGGTCGGCCAGCTCTACGGCTTCCTTACCCAGGCCGCGATG 
AGTCTTCGCGATGCACGCAACAAGCGGCAAGCGGCCAATGAAGTGAAAGCCATCATCCGCGACTTCCTCTAC 
AGCCTGCGCAGGGGCTGA