ViewGene
Locus Name:
GeneID:
Location:

GeneID:3949
TrivialName: PA14_21900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21900
PAO1 Ortholog Locus:PA3255
Sequence Length:579
Protein Length:192
Start: 1905996
Stop: 1905418
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06643.1|AE004748_1 (AE004748) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/192 (99%), Positives = 191/192 (99%)
Sequence:
ATGGAGAGTCTCGGCTGGGTCGACGAATCCTTCGTCCGCCGCGACGCCGAACTGATGGAGCAGTACGCCGAA
GGCAAGCTGTCCATGGACCTGTACATGGACTACACCCTGCAACCGCTGATCGGTCGCAGCGTCGAGGAAGTC
GAGCGGGAAGTGGAGGCCTACGTCGAGGAGGTCATCGAGCCGCTGATCTACAGCGACGCCTGCGCCTGCCTG
GCGCGCCACCGCAGCGCCAACGACCGGGTGCTGATCGTCTCCGCATCCGGGGTGCACCTGGTCAAGCCGATC
GCGGCGCGGATCGGCGTCGACGAAGTCCTCGCCATCGATCTCGAAGTGCTCGACGGACACTACACCGGCCGC
ACCCTCGGCACCCTCACCTATCGCGAAGGCAAGGTATTGCGTCTGCTCGACCTGCTGGAAGGAGACGATCGC
CAACTGGCCGACGCCTGGTTCTATTCGGACTCGCGCAACGACCTGCCGCTGCTGAAGCTGGTCGGCCATCCG
AACACGGTCAATCCGGACCCGACCCTGCTCGCCTACGCCAAGGAAATGGGCTGGCCGGTCAACGCCTGGCGC
TGA
Translation:
MESLGWVDESFVRRDAELMEQYAEGKLSMDLYMDYTLQPLIGRSVEEVEREVEAYVEEVIEPLIYSDACACL
ARHRSANDRVLIVSASGVHLVKPIAARIGVDEVLAIDLEVLDGHYTGRTLGTLTYREGKVLRLLDLLEGDDR
QLADAWFYSDSRNDLPLLKLVGHPNTVNPDPTLLAYAKEMGWPVNAWR*
AnnotationID:3956GeneID:3949
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:56
Gene Name:
Confidence Code:3
GeneProduct:putative HAD-superfamily hydrolase
Cell Localization:()
Synonyms:PA3255
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative hydrolase
Functional Category Confidence Code:5
COGs:COG0560
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57349.1| (AE016870) HAD-superfamily hydrolase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 193

 Score =  241 bits (614), Expect = 2e-63
 Identities = 113/192 (58%), Positives = 151/192 (78%), Gaps = 1/192 (0%)

>gb|AAN67342.1|AE016360_8 (AE016780) hydrolase, haloacid dehalogenase-like family
           [Pseudomonas putida KT2440]
          Length = 217

 Score =  231 bits (590), Expect = 1e-60
 Identities = 114/192 (59%), Positives = 141/192 (73%), Gaps = 1/192 (0%)








 
Structural Features:
COG0560, SerB, Phosphoserine phosphatase 
[Amino acid transport and metabolism]
CD-Length = 212 residues,  81.6% aligned
Score =  141 bits (357), Expect = 5e-35
Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 10/183 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7900




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25043




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32288




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3949_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3949
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6186
                           PA3255_tr
                           translation of PA3255
                           192
                           99.47
                           99.47
                           0
                           989.0
     

     
     
171524
                           gb|AAG06643.1|AE004748_1
                           (AE004748) hypothetical protein PA3255 [Pseudomonas aeruginosa PAO1]
                           192
                           99.47
                           99.47
                           0
                           989.0
     

     
     
171525
                           gb|AAO57349.1|
                           (AE016870) HAD-superfamily hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           193
                           58.54
                           78.23
                           1
                           613.0
     

     
     
171526
                           gb|AAN67342.1|AE016360_8
                           (AE016780) hydrolase, haloacid dehalogenase-like family [Pseudomonas putida KT2440]
                           217
                           52.53
                           64.97
                           25
                           591.0
     

     
     
6187
                           PA1143_tr
                           translation of PA1143
                           217
                           51.61
                           63.13
                           25
                           554.0
     

     






      

          
GC ORFID: 46951How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3255Glimmer Score: 

          
Start: 3047935Stop: 3048513

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3255 translation of PA3255Homolog Bit Score 385.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2681 (ORF: BLASTX 275.0), t_PA1143 (ORF: BLASTX 248.0), t_PA3255 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGAGTCTCGGCTGGGTCGACGAATCCTTCGTCCGCCGCGACGCCGAACTGATGGAGCAGTACGCCGAA 
GGCAAGCTGTCCATGGACCTGTACATGGACTACACCCTGCAACCGCTGATCGGTCGCAGCGTCGAGGAAGTC 
GAGCGGGAAGTGGAGGCCTACGTCGAGGAGGTCATCGAGCCGCTGATCTACAGCGACGCCTGCGCCTGCCTG 
GCGCGCCACCGCAGCGCCAACGACCGGGTGCTGATCGTCTCCGCATCCGGGGTGCACCTGGTCAAGCCGATC 
GCGGCGCGGATCGGCGTCGACGAAGTCCTCGCCATCGATCTCGAAGTGCTCGACGGACACTACACCGGCCGC 
ACCCTCGGCACCCTCACCTATCGCGAAGGCAAGGTATTGCGTCTGCTCGACCTGCTGGAAGGAGACGATCGC 
CAACTGGCCGACGCCTGGTTCTATTCGGACTCGCGCAACGACCTGCCGCTGCTGAAGCTGGTCGGCCATCCG 
AACACGGTCAATCCGGACCCGACCCTGCTCGCCTACGCCAAGGAAATGGGCTGGCCGGTCAACGCCTGGCGC 
TGA