ViewGene
Locus Name:
GeneID:
Location:

GeneID:3942
TrivialName: PA14_63340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63340
PAO1 Ortholog Locus:PA4793
Sequence Length:564
Protein Length:187
Start: 5652314
Stop: 5652877
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08179.1|AE004892_10 (AE004892) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 187/187 (100%), Positives = 187/187 (100%)
Sequence:
ATGATCCGCCGAATCCTGCTGCTCGGCCTGCTCCTCAGCCTCGCAGCCTGCGAAACCACCCAGCTCGACCGC
GACTTCGACAGCTCCCGCGACTTCGCCGCCTACCGTAGCTGGAGCTGGTCGCAACCCGCCTTCGAATACCGC
CCCGACGACCCACGCATCAAGAGCGACCTCACCGAGCAACGCATCCGCGAAGCCGTCGCCCAGCAGCTCGAC
CAGCGCGGCCTGCGTCCGGCCCAGGGCAACGCCAGGGGCGACGTCACGGTGCGCGCCTACCTGATCGTCGAC
GATCGCCAGGACCAGATCACCACCAACTACGGCGGCGGTTACTGGGGCGGCTACTGGGGAGGGTACTGGGGC
GGCCCGGCGATGGCCGAGACGCGCACCGTGAATTACAAGGTTGCCACCCTCCAGGTCGACCTGTTCGACGGC
AAGGACGGCAAGCTGGTCTGGCGCGGCAGCGGCGAGCAGATCATGCGCACCAGCCCGCCGAGCCCGGCCGAG
CGCGAGCAGGCGATCCGCGAGACGGTGCAGAAAGTCATGTCGCAATACCCGCCGCGCTGA
Translation:
MIRRILLLGLLLSLAACETTQLDRDFDSSRDFAAYRSWSWSQPAFEYRPDDPRIKSDLTEQRIREAVAQQLD
QRGLRPAQGNARGDVTVRAYLIVDDRQDQITTNYGGGYWGGYWGGYWGGPAMAETRTVNYKVATLQVDLFDG
KDGKLVWRGSGEQIMRTSPPSPAEREQAIRETVQKVMSQYPPR*
AnnotationID:3949GeneID:3942
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 08:08:24
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4793
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66203.1|AE016248_6 (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 189

 Score =  290 bits (741), Expect = 4e-78
 Identities = 134/186 (72%), Positives = 153/186 (82%), Gaps = 1/186 (0%)

>gb|AAO54280.1| (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 187

 Score =  257 bits (656), Expect = 3e-68
 Identities = 118/189 (62%), Positives = 152/189 (80%), Gaps = 4/189 (2%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7886




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25029




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3942
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6178
                           PA4793_tr
                           translation of PA4793
                           187
                           99.99
                           99.99
                           0
                           993.0
     

     
     
171493
                           gb|AAG08179.1|AE004892_10
                           (AE004892) hypothetical protein PA4793 [Pseudomonas aeruginosa PAO1]
                           187
                           99.99
                           99.99
                           0
                           993.0
     

     
     
171494
                           gb|AAN66203.1|AE016248_6
                           (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
                           190
                           70.52
                           80.52
                           4
                           741.0
     

     
     
171495
                           gb|AAO54280.1|
                           (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           189
                           62.43
                           80.42
                           4
                           661.0
     

     






      

          
GC ORFID: 46944How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4793Glimmer Score: 

          
Start: 4915994Stop: 4916557

          
Length: 564


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4793 translation of PA4793Homolog Bit Score 387.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3617 (ORF: BLASTX 241.0), t_PA4793 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCCGAATCCTGCTGCTCGGCCTGCTCCTCAGCCTCGCAGCCTGCGAAACCACCCAGCTCGACCGC 
GACTTCGACAGCTCCCGCGACTTCGCCGCCTACCGTAGCTGGAGCTGGTCGCAACCCGCCTTCGAATACCGC 
CCCGACGACCCACGCATCAAGAGCGACCTCACCGAGCAACGCATCCGCGAAGCCGTCGCCCAGCAGCTCGAC 
CAGCGCGGCCTGCGTCCGGCCCAGGGCAACGCCAGGGGCGACGTCACGGTGCGCGCCTACCTGATCGTCGAC 
GATCGCCAGGACCAGATCACCACCAACTACGGCGGCGGTTACTGGGGCGGCTACTGGGGAGGGTACTGGGGC 
GGCCCGGCGATGGCCGAGACGCGCACCGTGAATTACAAGGTTGCCACCCTCCAGGTCGACCTGTTCGACGGC 
AAGGACGGCAAGCTGGTCTGGCGCGGCAGCGGCGAGCAGATCATGCGCACCAGCCCGCCGAGCCCGGCCGAG 
CGCGAGCAGGCGATCCGCGAGACGGTGCAGAAAGTCATGTCGCAATACCCGCCGCGCTGA