ViewGene

Locus Name:
GeneID:
Location:

GeneID:3935
TrivialName: PA14_43260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43260
PAO1 Ortholog Locus:
Sequence Length:1350
Protein Length:449
Start: 3854065
Stop: 3855414
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
CTGCCTGGAGGACATCGACGCCAACGCGCTCCCGGTACAGCACTACGATGGCCGCAACGCCTGACGCTGGCG
CAGGTAGCCGATCACCTCGGCCTGGTTGCCACGGAACTCGACGCGGTCTTCCTTGCTCTGCCGCTGGAAGGC
GTACATCGGGTCGTAGTACTCCTTGAGCAGCCCCTCGATCCAGCCGCGATGGGTATCCACCGAGCCGTCGCG
GCCCTGCTCTTCCAGCGCCTGCACGAGGATCGCCGCCAGCCGCTGGTAGCGCTCGCCGCCGAGGCGCTTGAC
GATGCCGGCGAGGCTCTTCTGCAGGTAGGCGGAGAAGGCGGCGAAGCCCTCCTCCACGCCCACCACGCGCTC
GAACTCGCTGCGCAGGTCGATCACGTAGTCCCTGAGGATACGCTCGACACGCTGCTCGAAGGCATCCTCCAG
CCAGACCAGCGGGTAGCCCTGCATGCCCTGGTACAGCTCCAGCGGCAAGGAGCAGCTGCCGACGATCCGCCC
CTCGTCCTCGAGGACGAACTGGCCGACGCCACGATGACGCTTCTTCAGGATGTCGATGGCCAGGCGGTTCTC
GAAGTCGATCTGCGCCGGCTGCGGCGTGGCTCGCCGGCCAAAGCTGGAGCCGCGGTGGTTGGCGTGGCCTTC
GAGATCGAGGCTGTTGTCCAGCGCCGCGATCACCTCGGTCTTGCCGCAACCGGTGAGGCCGCCGACCAGCAC
GAAATCGCACTCGTCGACCGCCGCGCGGGTGGTTTCGAAAAGGAAGTTGCGCAACGCCTTGTAGCCGCCGAT
CACCCGTGGGTAGTCGATGCCGGCGTCCTGCTTCAGCCACTGCTGGACGATCTGCGAGCGCAGGCCGCCGCG
GAAGCAATACAGGTAGCCGTTCGGGTTGGCTTCGGCGAAGGCTTTCCAGGCCGCCAGCCGTTCGGCCTTGAG
CGCCCCGCAGACCAGTTCGTGACCAAGGGCGATGGCGGCCTGCTGGCCGTGCTGCTTATAGCTGGTGCCGAC
CTTCTGCCGCTCGATGTCGTTCATCAGCGGCCGGTTGACCGTGTTGGGAAAGGCGCCCTTGTGGTACTCCAC
CGGGGCGCGCACATCCATCAGGGGGATATCGTCGAGAAACAGCTCGCGGTAGTGCTGGGTGTTGTCGCGCAT
TACAGCACCTGTACCGCGAGACTCTGTCGCTCGACCAGTTCGCCGATCGGCGCCAGTTGCAGGCCGAGTTCC
GCCGCCACGGCGAGGAACTCCGCCTCGCCTTCCGGAGCCACCGCCACCAGCAGGCCGCCGCTGGTCTGCGGA
TCGCAAAGCAACAGCTTCTGCACCTCCGGCAGTGGCGCGATGCGCTCGCCATAG
Translation:
MPGGHRRQRAPGTALRWPQRLTLAQVADHLGLVATELDAVFLALPLEGVHRVVVLLEQPLDPAAMGIHRAVA
ALLFQRLHEDRRQPLVALAAEALDDAGEALLQVGGEGGEALLHAHHALELAAQVDHVVPEDTLDTLLEGILQ
PDQRVALHALVQLQRQGAAADDPPLVLEDELADATMTLLQDVDGQAVLEVDLRRLRRGSPAKAGAAVVGVAF
EIEAVVQRRDHLGLAATGEAADQHEIALVDRRAGGFEKEVAQRLVAADHPWVVDAGVLLQPLLDDLRAQAAA
EAIQVAVRVGFGEGFPGRQPFGLERPADQFVTKGDGGLLAVLLIAGADLLPLDVVHQRPVDRVGKGALVVLH
RGAHIHQGDIVEKQLAVVLGVVAHYSTCTARLCRSTSSPIGASCRPSSAATARNSASPSGATATSRPPLVCG
SQSNSFCTSGSGAMRSP*
AnnotationID:3942GeneID:3935
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 16:04:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits found at any threshold.
Genomic Context:
Comment:
ReferenceID:14968
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25015
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 46937How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene357Glimmer Score:
Start: 1099844Stop: 1098495
Length: 1350
Start Codon: CTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: psyr_15may02_Scaffold2_revised_gene3570Homolog Bit Score 388.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene357 (ORF: GLIMMER)
GC ORF Sequence
CTGCCTGGAGGACATCGACGCCAACGCGCTCCCGGTACAGCACTACGATGGCCGCAACGCCTGACGCTGGCG
CAGGTAGCCGATCACCTCGGCCTGGTTGCCACGGAACTCGACGCGGTCTTCCTTGCTCTGCCGCTGGAAGGC
GTACATCGGGTCGTAGTACTCCTTGAGCAGCCCCTCGATCCAGCCGCGATGGGTATCCACCGAGCCGTCGCG
GCCCTGCTCTTCCAGCGCCTGCACGAGGATCGCCGCCAGCCGCTGGTAGCGCTCGCCGCCGAGGCGCTTGAC
GATGCCGGCGAGGCTCTTCTGCAGGTAGGCGGAGAAGGCGGCGAAGCCCTCCTCCACGCCCACCACGCGCTC
GAACTCGCTGCGCAGGTCGATCACGTAGTCCCTGAGGATACGCTCGACACGCTGCTCGAAGGCATCCTCCAG
CCAGACCAGCGGGTAGCCCTGCATGCCCTGGTACAGCTCCAGCGGCAAGGAGCAGCTGCCGACGATCCGCCC
CTCGTCCTCGAGGACGAACTGGCCGACGCCACGATGACGCTTCTTCAGGATGTCGATGGCCAGGCGGTTCTC
GAAGTCGATCTGCGCCGGCTGCGGCGTGGCTCGCCGGCCAAAGCTGGAGCCGCGGTGGTTGGCGTGGCCTTC
GAGATCGAGGCTGTTGTCCAGCGCCGCGATCACCTCGGTCTTGCCGCAACCGGTGAGGCCGCCGACCAGCAC
GAAATCGCACTCGTCGACCGCCGCGCGGGTGGTTTCGAAAAGGAAGTTGCGCAACGCCTTGTAGCCGCCGAT
CACCCGTGGGTAGTCGATGCCGGCGTCCTGCTTCAGCCACTGCTGGACGATCTGCGAGCGCAGGCCGCCGCG
GAAGCAATACAGGTAGCCGTTCGGGTTGGCTTCGGCGAAGGCTTTCCAGGCCGCCAGCCGTTCGGCCTTGAG
CGCCCCGCAGACCAGTTCGTGACCAAGGGCGATGGCGGCCTGCTGGCCGTGCTGCTTATAGCTGGTGCCGAC
CTTCTGCCGCTCGATGTCGTTCATCAGCGGCCGGTTGACCGTGTTGGGAAAGGCGCCCTTGTGGTACTCCAC
CGGGGCGCGCACATCCATCAGGGGGATATCGTCGAGAAACAGCTCGCGGTAGTGCTGGGTGTTGTCGCGCAT
TACAGCACCTGTACCGCGAGACTCTGTCGCTCGACCAGTTCGCCGATCGGCGCCAGTTGCAGGCCGAGTTCC
GCCGCCACGGCGAGGAACTCCGCCTCGCCTTCCGGAGCCACCGCCACCAGCAGGCCGCCGCTGGTCTGCGGA
TCGCAAAGCAACAGCTTCTGCACCTCCGGCAGTGGCGCGATGCGCTCGCCATAG