ViewGene
Locus Name:
GeneID:
Location:

GeneID:3915
TrivialName: PA14_58110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58110
PAO1 Ortholog Locus:PA4478
Sequence Length:606
Protein Length:201
Start: 5174329
Stop: 5173724
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07866.1|AE004861_7 (AE004861) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/201 (98%), Positives = 198/201 (98%)
Sequence:
ATGCCGTCGCTGTATCTCGCCTCCGCCTCGCCCCGTCGCCGTGAACTGCTGACCCAGATCGGCGTTCCGCTG
TCCGTGCTCGCCACCGCTATCGACGAGTCCCCCTTGCCGAACGAAGCGCCCGCCGCCTACGTCGAGCGCCTG
GCGCGCGGCAAGGCGGCCGCCGGGCTGGCTATGCTGGAAGGGCGCGGCGAGGACGGTTGTGTCCTGGGCGCG
GATACCTCGGTGGTGATCGACGGGCGAATTCTCGGCAAGCCCGTGGACCAGGCCGAGGGGCTGGCCATGCTG
GCTACGCTGTCCGGGCGCGAACACCAGGTTCTCACCGCCGTGGCCCTGGCCGCCACTGGTGGCGTCGAGGCG
CGGGTGGTGGAGTGCCGGGTGCGCTTCCGCCAGGTCGCTCCGGAAGAAGCGCTGCGCTACTGGCAGAGCGGC
GAGCCGGCGGACAAGGCGGGCGGATATGCGATCCAGGGCCTCGGGGCGATATTCGTCAGTCGCATCGAAGGC
AGTTACAGTGCGGTGGTCGGGCTGCCTTTGTGTGAAACTGCGGAACTGTTGAGGGAATTCGGCATCCCTTGC
TGGCAGCCCGTGGGTGGCAACCCGCCGTAA
Translation:
MPSLYLASASPRRRELLTQIGVPLSVLATAIDESPLPNEAPAAYVERLARGKAAAGLAMLEGRGEDGCVLGA
DTSVVIDGRILGKPVDQAEGLAMLATLSGREHQVLTAVALAATGGVEARVVECRVRFRQVAPEEALRYWQSG
EPADKAGGYAIQGLGAIFVSRIEGSYSAVVGLPLCETAELLREFGIPCWQPVGGNPP*
AnnotationID:3922GeneID:3915
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 11:11:47
Gene Name:
Confidence Code:3
GeneProduct:putative Maf-like protein
Cell Localization:()
Synonyms:maf
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0424,cd00555,pfam02545
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57918.1| (AE016872) maf protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 200

 Score =  277 bits (708), Expect = 3e-74
 Identities = 146/199 (73%), Positives = 158/199 (79%), Gaps = 1/199 (0%)

>gb|AAN66561.1|AE016284_9 (AE016777) maf protein [Pseudomonas putida KT2440]
          Length = 203

 Score =  255 bits (652), Expect = 1e-67
 Identities = 133/200 (66%), Positives = 155/200 (77%), Gaps = 3/200 (1%)

>emb|CAC93138.1| (AJ414158) putative inhibitor of septum formation [Yersinia pestis
           CO92]
          Length = 197

 Score =  170 bits (431), Expect = 4e-42
 Identities = 97/188 (51%), Positives = 124/188 (65%), Gaps = 3/188 (1%)







 
Structural Features:
COG0424, Maf, Nucleotide-binding protein implicated in inhibition 
of septum formation 
[Cell division and chromosome partitioning]
CD-Length = 193 residues,  99.5% aligned
Score =  233 bits (596), Expect = 2e-62
Identities = 107/195 (54%), Positives = 122/195 (62%), Gaps = 4/195 (2%)

cd00555, Maf, Nucleotide binding protein Maf.
CD-Length = 180 residues, 100.0% aligned
Score =  222 bits (567), Expect = 6e-59
Identities = 102/183 (55%), Positives = 119/183 (65%), Gaps = 4/183 (2%)

pfam02545, Maf, Maf-like protein.
CD-Length = 193 residues,  97.4% aligned
Score =  185 bits (472), Expect = 5e-48
Identities = 86/191 (45%), Positives = 110/191 (57%), Gaps = 5/191 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:7833




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24975




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31516




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3915_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3915
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6153
                           PA4478_tr
                           translation of PA4478
                           201
                           98.00
                           98.50
                           0
                           1002.0
     

     
     
170773
                           gb|AAG07866.1|AE004861_7
                           (AE004861) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           201
                           98.00
                           98.50
                           0
                           1002.0
     

     
     
170774
                           gb|AAO57918.1|
                           (AE016872) maf protein [Pseudomonas syringae pv. tomato str. DC3000]
                           201
                           72.63
                           78.60
                           1
                           708.0
     

     
     
170775
                           gb|AAN66561.1|AE016284_9
                           (AE016777) maf protein [Pseudomonas putida KT2440]
                           206
                           64.56
                           75.24
                           8
                           654.0
     

     
     
170777
                           emb|CAE37712.1|
                           (BX640430) Maf-like protein [Bordetella parapertussis]
                           217
                           49.30
                           56.22
                           26
                           446.0
     

     






      

          
GC ORFID: 46917How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4478Glimmer Score: 

          
Start: 4438008Stop: 4437403

          
Length: 606


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4478 translation of PA4478Homolog Bit Score 390.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5508 (ORF: BLASTX 269.0), t_PA4478 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGTCGCTGTATCTCGCCTCCGCCTCGCCCCGTCGCCGTGAACTGCTGACCCAGATCGGCGTTCCGCTG 
TCCGTGCTCGCCACCGCTATCGACGAGTCCCCCTTGCCGAACGAAGCGCCCGCCGCCTACGTCGAGCGCCTG 
GCGCGCGGCAAGGCGGCCGCCGGGCTGGCTATGCTGGAAGGGCGCGGCGAGGACGGTTGTGTCCTGGGCGCG 
GATACCTCGGTGGTGATCGACGGGCGAATTCTCGGCAAGCCCGTGGACCAGGCCGAGGGGCTGGCCATGCTG 
GCTACGCTGTCCGGGCGCGAACACCAGGTTCTCACCGCCGTGGCCCTGGCCGCCACTGGTGGCGTCGAGGCG 
CGGGTGGTGGAGTGCCGGGTGCGCTTCCGCCAGGTCGCTCCGGAAGAAGCGCTGCGCTACTGGCAGAGCGGC 
GAGCCGGCGGACAAGGCGGGCGGATATGCGATCCAGGGCCTCGGGGCGATATTCGTCAGTCGCATCGAAGGC 
AGTTACAGTGCGGTGGTCGGGCTGCCTTTGTGTGAAACTGCGGAACTGTTGAGGGAATTCGGCATCCCTTGC 
TGGCAGCCCGTGGGTGGCAACCCGCCGTAA