ViewGene
Locus Name:
GeneID:
Location:

GeneID:3907
TrivialName: PA14_56770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56770
PAO1 Ortholog Locus:PA4365
Sequence Length:603
Protein Length:200
Start: 5056300
Stop: 5056902
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07753.1|AE004852_6 (AE004852) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 200/200 (100%), Positives = 200/200 (100%)
Sequence:
ATGTGGCAGAGCTATCTCAACGGCATCCTGGTGGCTGCCGGCCTGATCATCGCCATCGGCGCGCAGAATGCC
TTCGTCCTCGCGCAGAGCCTGCGCCGCGAGCATCACCTCTCGGTGGCCGCGCTCTGCGTGTTCTGCGACGCG
GTGCTGGTCAGCCTCGGCGTGTTCGGCCTGGCCAAGCTGCTGCTGGAAAACCCGACGCTGCTGGCCATCGCC
CGCTGGGGCGGGATCGCCTTCCTGACCTGGTACGGGCTCAAGGCGCTGCTTCGCGCGTTGCGCCCGGACGCT
CTCGGCAACGCCGCGGAAACCGGGCCACGCTCGCGCAAGGCGGTGCTTCTGGCGGCACTGGCGGTCACCCTG
CTCAACCCCCACGTCTATCTCGATACCGTACTTCTGATCGGTTCGCTCGGCGCCCAGCAGGCCGCGCCGGGC
GCCTATGCCCTCGGCGCGGCCAGCGCCTCGCTGATGTGGTTCTTCGCCCTCGCCCTCGGCGCGGCGTGGCTG
GCCCCCTGGCTGGCGCGCCCGGCCACCTGGCGCCTGCTCGACCTGATGGTGGCGGCCATGATGCTGGGCATG
GCCGCGCAACTGCTGTTCCGGGGATAA
Translation:
MWQSYLNGILVAAGLIIAIGAQNAFVLAQSLRREHHLSVAALCVFCDAVLVSLGVFGLAKLLLENPTLLAIA
RWGGIAFLTWYGLKALLRALRPDALGNAAETGPRSRKAVLLAALAVTLLNPHVYLDTVLLIGSLGAQQAAPG
AYALGAASASLMWFFALALGAAWLAPWLARPATWRLLDLMVAAMMLGMAAQLLFRG*
AnnotationID:3914GeneID:3907
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 06:06:46
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA4365
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1279,pfam01810
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66541.1|AE016282_9 (AE016777) transporter, LysE family [Pseudomonas putida KT2440]
          Length = 204

 Score =  304 bits (778), Expect = 2e-82
 Identities = 152/198 (76%), Positives = 168/198 (84%)

>gb|AAO57812.1| (AE016871) transporter, LysE family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 200

 Score =  301 bits (770), Expect = 2e-81
 Identities = 145/197 (73%), Positives = 168/197 (85%)

>emb|CAC89762.1| (AJ414145) putative LysE type translocator [Yersinia pestis CO92]
          Length = 205

 Score =  190 bits (483), Expect = 4e-48
 Identities = 94/198 (47%), Positives = 135/198 (68%), Gaps = 2/198 (1%)






 
Structural Features:
COG1279, Lysine efflux permease
CD-Length = 202 residues, 100.0% aligned
Score =  196 bits (499), Expect = 3e-51
Identities = 110/202 (54%), Positives = 137/202 (67%), Gaps = 2/202 (0%)

pfam01810, LysE, LysE type translocator.
CD-Length = 191 residues, 100.0% aligned
Score = 96.8 bits (241), Expect = 3e-21
Identities = 67/194 (34%), Positives = 97/194 (50%), Gaps = 9/194 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7817




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17116




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3907_cdd.html


    		




 
URL:

















    ReferenceID:24959




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3907
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6145
                           PA4365_tr
                           translation of PA4365
                           200
                           99.99
                           99.99
                           0
                           1004.0
     

     
     
170556
                           gb|AAG07753.1|AE004852_6
                           (AE004852) probable transporter [Pseudomonas aeruginosa PAO1]
                           200
                           99.99
                           99.99
                           0
                           1004.0
     

     
     
170557
                           gb|AAN66541.1|AE016282_9
                           (AE016777) transporter, LysE family [Pseudomonas putida KT2440]
                           205
                           74.14
                           81.95
                           6
                           778.0
     

     
     
170558
                           gb|AAO57812.1|
                           (AE016871) transporter, LysE family [Pseudomonas syringae pv. tomato str. DC3000]
                           200
                           72.50
                           84.00
                           0
                           766.0
     

     
     
170566
                           gb|AAL52455.1|
                           (AE009566) TRANSPORTER, LysE family [Brucella melitensis 16M]
                           206
                           47.57
                           61.16
                           8
                           450.0
     

     






      

          
GC ORFID: 46909How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4365Glimmer Score: 

          
Start: 4319976Stop: 4320578

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4365 translation of PA4365Homolog Bit Score 391.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1975 (ORF: BLASTX 300.0), t_PA4365 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGCAGAGCTATCTCAACGGCATCCTGGTGGCTGCCGGCCTGATCATCGCCATCGGCGCGCAGAATGCC 
TTCGTCCTCGCGCAGAGCCTGCGCCGCGAGCATCACCTCTCGGTGGCCGCGCTCTGCGTGTTCTGCGACGCG 
GTGCTGGTCAGCCTCGGCGTGTTCGGCCTGGCCAAGCTGCTGCTGGAAAACCCGACGCTGCTGGCCATCGCC 
CGCTGGGGCGGGATCGCCTTCCTGACCTGGTACGGGCTCAAGGCGCTGCTTCGCGCGTTGCGCCCGGACGCT 
CTCGGCAACGCCGCGGAAACCGGGCCACGCTCGCGCAAGGCGGTGCTTCTGGCGGCACTGGCGGTCACCCTG 
CTCAACCCCCACGTCTATCTCGATACCGTACTTCTGATCGGTTCGCTCGGCGCCCAGCAGGCCGCGCCGGGC 
GCCTATGCCCTCGGCGCGGCCAGCGCCTCGCTGATGTGGTTCTTCGCCCTCGCCCTCGGCGCGGCGTGGCTG 
GCCCCCTGGCTGGCGCGCCCGGCCACCTGGCGCCTGCTCGACCTGATGGTGGCGGCCATGATGCTGGGCATG 
GCCGCGCAACTGCTGTTCCGGGGATAA