ViewGene
Locus Name:
GeneID:
Location:

GeneID:3885
TrivialName: PA14_30800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30800
PAO1 Ortholog Locus:PA2575
Sequence Length:603
Protein Length:200
Start: 2671487
Stop: 2670885
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05963.1|AE004686_1 (AE004686) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 196/200 (98%), Positives = 199/200 (99%)
Sequence:
ATGTCTGACGCATTCCTCTCCTCCATCAAGAACCGCCGCACCATCTACGCCCTGGACAAGCAACTGCCTATC
TCCCAGGAGAAAGTCGTCGAACTGGTCAAGGAGGCCGTCTCGCACAGCCCTTCCGCGTTCAACTCGCAGACC
TCGCGGGTGGTCGTGCTGTTCGGCGCCGAGCACGAGCAGTTCTGGAACATCGCCAAGGACGAGTTGAAGAAG
ATCGTTCCCGCCGACGCCTTCGCCGCCACCGAAACCAAGCTCAACTCCTTCGCTGCCGGTGCCGGCACCGTA
CTGTTCTTCGAAGACCAGACGGTAGTGCGCCAGCTTCAGGAGCAGTTCGCCCTCTACGCCGACAACTTCCCG
GTGTGGTCGGAGCAGGCCAGCGGCATGGCCCAGTTCGCGGTCTGGACCGTCCTCGCCGAGCACAAGGTCGGC
GCCAGCCTGCAGCACTACAACCCGCTGGTAGATGCCCAGACCCACAAGACCTGGAACCTGCCGGAAAGCTGG
AAGCTGCGCGCACAGATGCCTTTCGGTGCCATCGCCGCCCCGGCGGGCGAGAAAGCCTTCATCGCCGAAAGC
GAACGTTTCAAGGTCTTCGGCAACTGA
Translation:
MSDAFLSSIKNRRTIYALDKQLPISQEKVVELVKEAVSHSPSAFNSQTSRVVVLFGAEHEQFWNIAKDELKK
IVPADAFAATETKLNSFAAGAGTVLFFEDQTVVRQLQEQFALYADNFPVWSEQASGMAQFAVWTVLAEHKVG
ASLQHYNPLVDAQTHKTWNLPESWKLRAQMPFGAIAAPAGEKAFIAESERFKVFGN*
AnnotationID:3892GeneID:3885
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative nitroreductase
Cell Localization:()
Synonyms:PA2575
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:COG3560
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO80478.1| (AE016948) nitroreductase family protein, putative [Enterococcus
           faecalis V583]
          Length = 198

 Score =  240 bits (612), Expect = 4e-63
 Identities = 112/194 (57%), Positives = 143/194 (73%)

>gb|AAP08923.1| (AE017004) Nitroreductase family protein [Bacillus cereus ATCC
           14579]
          Length = 200

 Score =  231 bits (588), Expect = 3e-60
 Identities = 107/198 (54%), Positives = 143/198 (72%)








 
Structural Features:
COG3560, FMR2, Predicted oxidoreductase related to nitroreductase 
CD-Length = 200 residues,  99.5% aligned
Score =  316 bits (810), Expect = 2e-87
Identities = 141/199 (70%), Positives = 166/199 (83%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7773




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24915




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33142




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3885_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3885
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6120
                           PA2575_tr
                           translation of PA2575
                           200
                           98.00
                           99.50
                           0
                           1013.0
     

     
     
170273
                           gb|AAG05963.1|AE004686_1
                           (AE004686) hypothetical protein PA2575 [Pseudomonas aeruginosa PAO1]
                           200
                           98.00
                           99.50
                           0
                           1013.0
     

     
     
170274
                           gb|AAL54014.1|
                           (AE009711) Hypothetical Cytosolic Protein [Brucella melitensis 16M]
                           200
                           62.50
                           78.50
                           1
                           674.0
     

     
     
170275
                           gb|AAN33689.1|AE014546_12
                           (AE014546) conserved hypothetical protein [Brucella suis 1330]
                           200
                           62.50
                           78.50
                           1
                           674.0
     

     
     
170276
                           emb|CAC98187.1|
                           (AL596174) lin2962 [Listeria innocua]
                           200
                           60.00
                           75.00
                           1
                           650.0
     

     






      

          
GC ORFID: 46887How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2575Glimmer Score: 

          
Start: 2282439Stop: 2283041

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2575 translation of PA2575Homolog Bit Score 394.0

          
Other Homologs:  t_PA2575 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTGACGCATTCCTCTCCTCCATCAAGAACCGCCGCACCATCTACGCCCTGGACAAGCAACTGCCTATC 
TCCCAGGAGAAAGTCGTCGAACTGGTCAAGGAGGCCGTCTCGCACAGCCCTTCCGCGTTCAACTCGCAGACC 
TCGCGGGTGGTCGTGCTGTTCGGCGCCGAGCACGAGCAGTTCTGGAACATCGCCAAGGACGAGTTGAAGAAG 
ATCGTTCCCGCCGACGCCTTCGCCGCCACCGAAACCAAGCTCAACTCCTTCGCTGCCGGTGCCGGCACCGTA 
CTGTTCTTCGAAGACCAGACGGTAGTGCGCCAGCTTCAGGAGCAGTTCGCCCTCTACGCCGACAACTTCCCG 
GTGTGGTCGGAGCAGGCCAGCGGCATGGCCCAGTTCGCGGTCTGGACCGTCCTCGCCGAGCACAAGGTCGGC 
GCCAGCCTGCAGCACTACAACCCGCTGGTAGATGCCCAGACCCACAAGACCTGGAACCTGCCGGAAAGCTGG 
AAGCTGCGCGCACAGATGCCTTTCGGTGCCATCGCCGCCCCGGCGGGCGAGAAAGCCTTCATCGCCGAAAGC 
GAACGTTTCAAGGTCTTCGGCAACTGA