ViewGene

Locus Name:
GeneID:
Location:

GeneID:3881
TrivialName: PA14_68950
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68950
PAO1 Ortholog Locus:
Sequence Length:1284
Protein Length:427
Start: 6152184
Stop: 6150902
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GID3881 (PA14_68950) and GID6888 (PA14_68960) replaced by GID7405 (PA14_68955). Homology: gb|AAG08606.1|AE004935_3 (AE004935) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
Identities = 260/261 (99%), Positives = 261/261 (100%)
Sequence:
ATGCACGCGGATCTGGTCATCGTCGGCGCCGGCATGGTCGGTAGCGCCCTGGCCCTGGCCCTGGAGGGCAGC
GGCCTGGAGGTGCTGCTGGTGGACGGCGGCTCGCTCGACGTGGCGCCGTTCAAGCCGGAGGCGCCCTACGAG
CCGCGGGTCAGCGCGCTGTCCGAAGCCAGCCGGCGGATTCTCCAGCGCCTGCACGCCTGGGACGGCATCGTC
GCGCGCCGCGCCGAGCCCTATCGCGAGATGCAGGTGTGGGATGGCTCCGGCACCGGGCGGATCGGCTTCAGC
GCCGCCAGCGTGCACGCCGAGGTGCTCGGCCATATCGTCGAGAACCGGGTGGTGCAGGACGCTCTGCTGGAA
CGCCTGCACGATTCCACCACCGGCCTGCTGGCCAACGCGCGCCTGGAACAGATGCGCCACTCCGGTGACGAC
TGGCTGCTGACCCTGGCCGACGGCCGTCAGTTGCGCGCGCCGCTGGTGGTCGCCGCCGACGGCGCCAACTCG
GCGGTACGCCGCCTGGCCGGCTGCGCCACCCGCGAATGGGATTACCTGCACCACGCCATCGTCACCAGCGTG
CGCTGCGAGAACGCGCACCGCGCAACCGCCTGGCAGCGCTTCACCGACGACGGCCCGCTGGCCTTCCTGCCC
CTGCCGGACCGCGGCGACGAACACTGGTGCTCGATCGTCTGGTCGACCACCCCGGAACAGGCAGAACGGCTG
ATGGCGCTGGACGAGGATGGCTTCCGCGCTGCCCTCGGCGAAGCTTTCGAACGGCGCCtggGGCGCCATCCT
GCATGCCGACCGGCGCCTGTGCATCCCGCTGCGCCAGCGGCACGCCAAGCGTTACGTCGAGCCGGGCCTGGC
GCTGGTCGGCGACGCTGCGCACACCATCCACCCGCTGGCCGGACAGGGCGTGAACCTGGGTTTCCTCGATGC
GGCGGTGCTGTCCGAGGTTCTGTTGCATGCCCTGGAGCGCGGCGAACGGCTTGCCGACGAACGCGTGCTGAG
TCGCTTCGAGCGGCGGCGGATGCCGCACAACCTGGGCATGATGACGGCGATGGAAGGCTTCGAACGCCTGTT
CCAGGCCGACCGGTTGCCGCTGCGCTGGCTGCGCAACGCCGGCCTGCGCCTGGTCGACGGCCATCACGAGGC
CAAGGCGCTGTTCGTCCGCCAGGCGCTTGGCCTCAGCGGCGACCTGCCGGCGCTGGCACGAGTCTGAGCGGG
GCGGCTCCCCTGACGGGAGGGCCGCCAGTCCTCAGAACATCGCCGCGCAGTCACGCATGA
Translation:
MHADLVIVGAGMVGSALALALEGSGLEVLLVDGGSLDVAPFKPEAPYEPRVSALSEASRRILQRLHAWDGIV
ARRAEPYREMQVWDGSGTGRIGFSAASVHAEVLGHIVENRVVQDALLERLHDSTTGLLANARLEQMRHSGDD
WLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCENAHRATAWQRFTDDGPLAFLP
LPDRGDEHWCSIVWSTTPEQAERLMALDEDGFRAALGEAFERRLGRHPACRPAPVHPAAPAARQALRRAGPG
AGRRRCAHHPPAGRTGREPGFPRCGGAVRGSVACPGARRTACRRTRAESLRAAADAAQPGHDDGDGRLRTPV
PGRPVAAALAAQRRPAPGRRPSRGQGAVRPPGAWPQRRPAGAGTSLSGAAPLTGGPPVLRTSPRSHA*
AnnotationID:3888GeneID:3881
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 14:02:07
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydrolase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:INACTIVE
Pathway:
Homology:
>gb|AAN70762.1|AE016720_5 (AE016793) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase [Pseudomonas putida KT2440]
          Length = 407

 Score =  413 bits (1061), Expect = e-114
 Identities = 205/261 (78%), Positives = 224/261 (85%)

>gb|AAO58647.1| (AE016875) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
           hydroxylase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 409

 Score =  400 bits (1029), Expect = e-111
 Identities = 201/260 (77%), Positives = 223/260 (85%), Gaps = 1/260 (0%)

Structural Features:
Genomic Context:
Comment:
GID3881 (PA14_68950) and GID6888 (PA14_68960) replaced by GID7405 (PA14_68955).
ReferenceID:7765
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24907
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34852
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3881_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3881

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6116 PA5221_tr translation of PA5221 462 64.28 65.80 92 1351.0
170203 gb|AAG08606.1|AE004935_3 (AE004935) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1] 462 64.28 65.80 92 1351.0
170204 gb|AAN70762.1|AE016720_5 (AE016793) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Pseudomonas putida KT2440] 453 53.64 59.38 72 1071.0
170205 gb|AAO58647.1| (AE016875) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Pseudomonas syringae pv. tomato str. DC3000] 463 51.61 57.66 90 1035.0
170210 emb|CAD02886.1| (AL627277) possible monooxygenase [Salmonella enterica subsp. enterica serovar Typhi] 458 36.68 45.19 89 539.0
GC ORFID: 46883How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: psyr_15may02_Scaffold2_revised_gene3231Glimmer Score:
Start: 5415871Stop: 5414588
Length: 1284
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: psyr_15may02_Scaffold2_revised_gene3231 related to: gi|15600414|ref|NP_253908.1| (NC_002516) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa] pir||E82992 probable FAD-dependent monooxygenase PA5221 [imported] - Pseudomonas aeruginosa (strainHomolog Bit Score 395.0
Other Homologs: t_PA5221 (ORF: GLIMMER)
GC ORF Sequence
ATGCACGCGGATCTGGTCATCGTCGGCGCCGGCATGGTCGGTAGCGCCCTGGCCCTGGCCCTGGAGGGCAGC
GGCCTGGAGGTGCTGCTGGTGGACGGCGGCTCGCTCGACGTGGCGCCGTTCAAGCCGGAGGCGCCCTACGAG
CCGCGGGTCAGCGCGCTGTCCGAAGCCAGCCGGCGGATTCTCCAGCGCCTGCACGCCTGGGACGGCATCGTC
GCGCGCCGCGCCGAGCCCTATCGCGAGATGCAGGTGTGGGATGGCTCCGGCACCGGGCGGATCGGCTTCAGC
GCCGCCAGCGTGCACGCCGAGGTGCTCGGCCATATCGTCGAGAACCGGGTGGTGCAGGACGCTCTGCTGGAA
CGCCTGCACGATTCCACCACCGGCCTGCTGGCCAACGCGCGCCTGGAACAGATGCGCCACTCCGGTGACGAC
TGGCTGCTGACCCTGGCCGACGGCCGTCAGTTGCGCGCGCCGCTGGTGGTCGCCGCCGACGGCGCCAACTCG
GCGGTACGCCGCCTGGCCGGCTGCGCCACCCGCGAATGGGATTACCTGCACCACGCCATCGTCACCAGCGTG
CGCTGCGAGAACGCGCACCGCGCAACCGCCTGGCAGCGCTTCACCGACGACGGCCCGCTGGCCTTCCTGCCC
CTGCCGGACCGCGGCGACGAACACTGGTGCTCGATCGTCTGGTCGACCACCCCGGAACAGGCAGAACGGCTG
ATGGCGCTGGACGAGGATGGCTTCCGCGCTGCCCTCGGCGAAGCTTTCGAACGGCGCCtggGGCGCCATCCT
GCATGCCGACCGGCGCCTGTGCATCCCGCTGCGCCAGCGGCACGCCAAGCGTTACGTCGAGCCGGGCCTGGC
GCTGGTCGGCGACGCTGCGCACACCATCCACCCGCTGGCCGGACAGGGCGTGAACCTGGGTTTCCTCGATGC
GGCGGTGCTGTCCGAGGTTCTGTTGCATGCCCTGGAGCGCGGCGAACGGCTTGCCGACGAACGCGTGCTGAG
TCGCTTCGAGCGGCGGCGGATGCCGCACAACCTGGGCATGATGACGGCGATGGAAGGCTTCGAACGCCTGTT
CCAGGCCGACCGGTTGCCGCTGCGCTGGCTGCGCAACGCCGGCCTGCGCCTGGTCGACGGCCATCACGAGGC
CAAGGCGCTGTTCGTCCGCCAGGCGCTTGGCCTCAGCGGCGACCTGCCGGCGCTGGCACGAGTCTGAGCGGG
GCGGCTCCCCTGACGGGAGGGCCGCCAGTCCTCAGAACATCGCCGCGCAGTCACGCATGA