ViewGene
Locus Name:
GeneID:
Location:

GeneID:3855
TrivialName: PA14_58780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58780
PAO1 Ortholog Locus:PA4529
Sequence Length:612
Protein Length:203
Start: 5238075
Stop: 5238686
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07917.1|AE004867_3 (AE004867) dephosphocoenzyme A kinase [Pseudomonas aeruginosa PAO1]
Identities = 202/203 (99%), Positives = 202/203 (99%)
Sequence:
ATGACCCAACCCTGGATACTAGGCCTCACGGGCGGTATCGGCAGCGGCAAGAGCGCAGCCGCCGAGCATTTC
ATTTCCCTCGGCGTCCACCTGGTGGACGCCGACCATGCCGCCCGCTGGGTGGTGGAGCCGGGGCGTCCGGCC
CTGGCGAAGATCGTCGAACGCTTCGGCGACGGCATCCTCCTGCCCGATGGCCAGCTCGACCGCGCCGCCTTG
CGCGAGCGGATCTTCCAGGCGCCGGAGGAACGGCGCTGGCTGGAGCAATTGCTGCACCCGCTGATCGGCGCG
GAGATCGTCCAGTACCTGGCCAGGGCCGAATCGCCCTACGCCATCCTGGTCTCGCCGCTGCTGGTGGAGTCC
GGCCAGCGCCAGATGACCCAGCGCGTGCTGGTGGTGGATACCCCGGAACATCTGCAACTACAGCGCACCATG
CTTCGCGACAAGGTCTCCGAGGAGCAGGTGCGCTCGATCCTCCAGGCCCAGGCCCGGCGCGACGAGCGCTTG
AAGCACGCCGACGACGTGCTGGTCAACGACGGCGACCTGTCCCACCTGCAGCGTGAAGTCGAACGACTGCAC
GCCTTCTACCTGACCTTGCGAGGAGGCCGAGCATGA
Translation:
MTQPWILGLTGGIGSGKSAAAEHFISLGVHLVDADHAARWVVEPGRPALAKIVERFGDGILLPDGQLDRAAL
RERIFQAPEERRWLEQLLHPLIGAEIVQYLARAESPYAILVSPLLVESGQRQMTQRVLVVDTPEHLQLQRTM
LRDKVSEEQVRSILQAQARRDERLKHADDVLVNDGDLSHLQREVERLHAFYLTLRGGRA*
AnnotationID:3862GeneID:3855
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 17:05:18
Gene Name:coaE
Confidence Code:2
GeneProduct:Dephospho-CoA kinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01121,COG0237,KOG3220
Secondary Functional Category(ies):
EC Number:2.7.1.24
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66256.1|AE016254_3 (AE016776) kinase, putative [Pseudomonas putida KT2440]
          Length = 207

 Score =  292 bits (748), Expect = 7e-79
 Identities = 141/199 (70%), Positives = 166/199 (83%)

>gb|AAO54457.1| (AE016859) dephospho-CoA kinase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 207

 Score =  281 bits (720), Expect = 1e-75
 Identities = 137/201 (68%), Positives = 167/201 (83%)

>gb|AAP15646.1| (AE016978) putative DNA repair protein [Shigella flexneri 2a str.
           2457T]
          Length = 206

 Score =  190 bits (482), Expect = 5e-48
 Identities = 102/194 (52%), Positives = 125/194 (64%)






 
Structural Features:
pfam01121, CoaE, Dephospho-CoA kinase.
CD-Length = 179 residues,  98.9% aligned
Score =  221 bits (564), Expect = 1e-58
Identities = 108/177 (61%), Positives = 127/177 (71%)

COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism]
CD-Length = 201 residues,  97.5% aligned
Score =  202 bits (515), Expect = 5e-53
Identities = 92/196 (46%), Positives = 121/196 (61%)

KOG3220, Similar to bacterial dephospho-CoA kinase 
[Coenzyme transport and metabolism]
CD-Length = 225 residues,  84.9% aligned
Score =  156 bits (395), Expect = 4e-39
Identities = 76/191 (39%), Positives = 120/191 (62%), Gaps = 3/191 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7713




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24855




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31574




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3855_cdd.html


    		




 
URL:

















    ReferenceID:32988




  
Author/Investigator(s):
        Mishra P, Park PK, Drueckhammer DG.





  
Title:
        Identification of yacE (coaE) as the structural gene for dephosphocoenzyme A kinase in Escherichia coli K-12.




  
PubMed:
        11292795


MedLine:
        




    
Source:
J Bacteriol. 2001 May;183(9):2774-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11292795









           
Homologs By Global Alignment 

           

       



     
Gene ID:3855
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6082
                           PA4529_tr
                           translation of PA4529
                           203
                           99.50
                           99.50
                           0
                           1024.0
     

     
     
169753
                           gb|AAG07917.1|AE004867_3
                           (AE004867) dephosphocoenzyme A kinase [Pseudomonas aeruginosa PAO1]
                           203
                           99.50
                           99.50
                           0
                           1024.0
     

     
     
169754
                           gb|AAC17880.1|
                           (AF062531) unknown [Pseudomonas putida GB-1]
                           207
                           70.53
                           81.15
                           4
                           762.0
     

     
     
169755
                           emb|CAA52335.1|
                           (X74276) orfX [Pseudomonas putida]
                           207
                           70.53
                           82.12
                           4
                           752.0
     

     
     
169757
                           emb|CAA10648.1|
                           (AJ132364) hypothetical protein [Pseudomonas stutzeri]
                           203
                           69.95
                           81.28
                           1
                           734.0
     

     






      

          
GC ORFID: 46857How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4529Glimmer Score: 

          
Start: 4501754Stop: 4502365

          
Length: 612


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4529 translation of PA4529Homolog Bit Score 399.0

          
Other Homologs:  t_PA4529 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAACCCTGGATACTAGGCCTCACGGGCGGTATCGGCAGCGGCAAGAGCGCAGCCGCCGAGCATTTC 
ATTTCCCTCGGCGTCCACCTGGTGGACGCCGACCATGCCGCCCGCTGGGTGGTGGAGCCGGGGCGTCCGGCC 
CTGGCGAAGATCGTCGAACGCTTCGGCGACGGCATCCTCCTGCCCGATGGCCAGCTCGACCGCGCCGCCTTG 
CGCGAGCGGATCTTCCAGGCGCCGGAGGAACGGCGCTGGCTGGAGCAATTGCTGCACCCGCTGATCGGCGCG 
GAGATCGTCCAGTACCTGGCCAGGGCCGAATCGCCCTACGCCATCCTGGTCTCGCCGCTGCTGGTGGAGTCC 
GGCCAGCGCCAGATGACCCAGCGCGTGCTGGTGGTGGATACCCCGGAACATCTGCAACTACAGCGCACCATG 
CTTCGCGACAAGGTCTCCGAGGAGCAGGTGCGCTCGATCCTCCAGGCCCAGGCCCGGCGCGACGAGCGCTTG 
AAGCACGCCGACGACGTGCTGGTCAACGACGGCGACCTGTCCCACCTGCAGCGTGAAGTCGAACGACTGCAC 
GCCTTCTACCTGACCTTGCGAGGAGGCCGAGCATGA