ViewGene
Locus Name:
GeneID:
Location:

GeneID:3851
TrivialName: PA14_44150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44150
PAO1 Ortholog Locus:PA1573
Sequence Length:597
Protein Length:198
Start: 3929442
Stop: 3928846
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04962.1|AE004585_10 (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 196/198 (98%), Positives = 196/198 (98%)
Sequence:
ATGGACAAGGACGTATCCGGCGCGCTGCGCCGCCTGTTGCTGCTCGCCATGCTCGGACTGCCACTGGCGGCG
GCCGCTGCGGTCGAACCGCAGCGACTGGTGGATGCGGCGCGTGCCCAGGTGGGCGTGACCCTGGGCTACGAC
CCGGCCTACCGGCAACTGGACTATCCGGGCGGCGACGTGCCGCTGCAGACCGGGGTCTGCACCGACGTGGTG
GTCCGTGCGCTGCGTGGACAGGGGCTGGACCTGCAGAAGGCGGTGCACGAGGACATGCGTCGCCACTTCGCG
GCCTACCCGCAGCAATGGGGGATGAAAGGCACCGACCGCAACATCGATCACCGCCGCGTACCGAACCTGATG
ACCTGGTTCAGCCGCCAGGGCCTGGCACTGACGCCGAGCCGCGACGCCTCCGCCTACCGGGCCGGAGACATA
GTCGCCTGGCGCCTGGACAACGGCCTGCTGCATATCGGCGTGCTTTCCGATCGCAGGCTGGAGGGCAGGCCG
CTGGTGTTGCACAACATCGGTGCCGGCGTGCGGGAAGAGGACCTGCTGTTCCGCTACCAGGTCATCGGCCAC
TACCGCTTCCCGCAGGGCTGA
Translation:
MDKDVSGALRRLLLLAMLGLPLAAAAAVEPQRLVDAARAQVGVTLGYDPAYRQLDYPGGDVPLQTGVCTDVV
VRALRGQGLDLQKAVHEDMRRHFAAYPQQWGMKGTDRNIDHRRVPNLMTWFSRQGLALTPSRDASAYRAGDI
VAWRLDNGLLHIGVLSDRRLEGRPLVLHNIGAGVREEDLLFRYQVIGHYRFPQG*
AnnotationID:3858GeneID:3851
AnnotatorUID: diggins
Modification Date/Time: 2005-05-31 06:06:01
Gene Name:
Confidence Code:4
GeneProduct:putative periplasmic protein
Cell Localization:()
Synonyms:yijF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN83330.1|AE016770_130 (AE016770) Hypothetical protein yijF precursor [Escherichia coli
           CFT073]
          Length = 205

 Score =  222 bits (565), Expect = 1e-57
 Identities = 104/164 (63%), Positives = 129/164 (78%), Gaps = 1/164 (0%)

>gb|AAL22947.1| (AE008891) putative periplasmic protein [Salmonella typhimurium
           LT2]
          Length = 207

 Score =  208 bits (530), Expect = 1e-53
 Identities = 100/164 (60%), Positives = 123/164 (75%), Gaps = 1/164 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7705




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24847




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37232




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3851_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3851
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6077
                           PA1573_tr
                           translation of PA1573
                           198
                           98.98
                           98.98
                           0
                           1024.0
     

     
     
169717
                           gb|AAG04962.1|AE004585_10
                           (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           198
                           98.98
                           98.98
                           0
                           1024.0
     

     
     
169718
                           gb|AAN83330.1|AE016770_130
                           (AE016770) Hypothetical protein yijF precursor [Escherichia coli CFT073]
                           207
                           55.07
                           67.63
                           11
                           559.0
     

     
     
169719
                           gb|AAC76926.1|
                           (AE000468) orf, hypothetical protein [Escherichia coli K12]
                           209
                           53.11
                           66.02
                           15
                           557.0
     

     
     
169720
                           gb|AAC43050.1|
                           (U00006) No definition line found [Escherichia coli]
                           209
                           53.11
                           66.02
                           15
                           557.0
     

     






      

          
GC ORFID: 46853How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1573Glimmer Score: 

          
Start: 1024467Stop: 1025063

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1573 translation of PA1573Homolog Bit Score 399.0

          
Other Homologs:  t_PA1573 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAGGACGTATCCGGCGCGCTGCGCCGCCTGTTGCTGCTCGCCATGCTCGGACTGCCACTGGCGGCG 
GCCGCTGCGGTCGAACCGCAGCGACTGGTGGATGCGGCGCGTGCCCAGGTGGGCGTGACCCTGGGCTACGAC 
CCGGCCTACCGGCAACTGGACTATCCGGGCGGCGACGTGCCGCTGCAGACCGGGGTCTGCACCGACGTGGTG 
GTCCGTGCGCTGCGTGGACAGGGGCTGGACCTGCAGAAGGCGGTGCACGAGGACATGCGTCGCCACTTCGCG 
GCCTACCCGCAGCAATGGGGGATGAAAGGCACCGACCGCAACATCGATCACCGCCGCGTACCGAACCTGATG 
ACCTGGTTCAGCCGCCAGGGCCTGGCACTGACGCCGAGCCGCGACGCCTCCGCCTACCGGGCCGGAGACATA 
GTCGCCTGGCGCCTGGACAACGGCCTGCTGCATATCGGCGTGCTTTCCGATCGCAGGCTGGAGGGCAGGCCG 
CTGGTGTTGCACAACATCGGTGCCGGCGTGCGGGAAGAGGACCTGCTGTTCCGCTACCAGGTCATCGGCCAC 
TACCGCTTCCCGCAGGGCTGA