ViewGene
Locus Name:
GeneID:
Location:

GeneID:3850
TrivialName: PA14_45840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45840
PAO1 Ortholog Locus:PA1440
Sequence Length:588
Protein Length:195
Start: 4073921
Stop: 4074508
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04829.1|AE004573_8 (AE004573) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/195 (100%), Positives = 195/195 (100%)
Sequence:
ATGTCCTTCGCCGAAAAACTGTCCCGTCTGCAAGCCTTCCTCGATGCCGATGACCTGCACGAAGAAGCGCTG
GACTACGTGGCGACCCACGGCTACCTGACCGCCCTCTCCATCTGCCCGGAGCAGGTGCCGGAGCGGGAGTGG
ATCGACGCCCTGTTCGCCGAACCGCCGCACTACCGCAGCGATGAGGAGCGCCAGGAGATCGAGACTTCCCTC
GAGCAGCTCAAGGCGCACATCACCCGCGTGCTGGCCAGCGACGAAGACCTCGAGCTGCCCTGCGACCTCGAC
CTCGGCGACGAGCCGGACGACTCCGACCTGCGCGGCTGGTGCATCGGCTTCATGGAAGGCGTGTTCCTTCGC
GAGGAAGTCTGGTTCGAGCAGGCCGAGGAGGAAGTCAGCGAGTTGCTGCTGCCGATCATGGTCGGCTCCGGC
CTGTTCGACGAGCAGCCCGAGTTCGACGAGATCGCCCGCGACCGCCACCTGGTGGACGACATGGTCGCGCAG
ATTCCCGACCTGCTGACCAACCTGTTCCTGCTCTGCCAGGCGCCGGAAGAAAAGCCCGCCCTGCTCAAGCCG
CGCACGCACTAA
Translation:
MSFAEKLSRLQAFLDADDLHEEALDYVATHGYLTALSICPEQVPEREWIDALFAEPPHYRSDEERQEIETSL
EQLKAHITRVLASDEDLELPCDLDLGDEPDDSDLRGWCIGFMEGVFLREEVWFEQAEEEVSELLLPIMVGSG
LFDEQPEFDEIARDRHLVDDMVAQIPDLLTNLFLLCQAPEEKPALLKPRTH*
AnnotationID:3857GeneID:3850
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 09:09:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1440
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7703




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24845




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37358




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3850_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3850
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6076
                           PA1440_tr
                           translation of PA1440
                           195
                           99.99
                           99.99
                           0
                           1024.0
     

     
     
169714
                           gb|AAG04829.1|AE004573_8
                           (AE004573) hypothetical protein PA1440 [Pseudomonas aeruginosa PAO1]
                           195
                           99.99
                           99.99
                           0
                           1024.0
     

     
     
169716
                           gb|AAN70091.1|AE016648_9
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           195
                           77.94
                           86.15
                           0
                           796.0
     

     
     
169715
                           gb|AAO55163.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           195
                           76.92
                           87.17
                           0
                           814.0
     

     






      

          
GC ORFID: 46852How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1440Glimmer Score: 

          
Start: 879988Stop: 879401

          
Length: 588


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1440 translation of PA1440Homolog Bit Score 399.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5982 (ORF: BLASTX 320.0), t_PA1440 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTTCGCCGAAAAACTGTCCCGTCTGCAAGCCTTCCTCGATGCCGATGACCTGCACGAAGAAGCGCTG 
GACTACGTGGCGACCCACGGCTACCTGACCGCCCTCTCCATCTGCCCGGAGCAGGTGCCGGAGCGGGAGTGG 
ATCGACGCCCTGTTCGCCGAACCGCCGCACTACCGCAGCGATGAGGAGCGCCAGGAGATCGAGACTTCCCTC 
GAGCAGCTCAAGGCGCACATCACCCGCGTGCTGGCCAGCGACGAAGACCTCGAGCTGCCCTGCGACCTCGAC 
CTCGGCGACGAGCCGGACGACTCCGACCTGCGCGGCTGGTGCATCGGCTTCATGGAAGGCGTGTTCCTTCGC 
GAGGAAGTCTGGTTCGAGCAGGCCGAGGAGGAAGTCAGCGAGTTGCTGCTGCCGATCATGGTCGGCTCCGGC 
CTGTTCGACGAGCAGCCCGAGTTCGACGAGATCGCCCGCGACCGCCACCTGGTGGACGACATGGTCGCGCAG 
ATTCCCGACCTGCTGACCAACCTGTTCCTGCTCTGCCAGGCGCCGGAAGAAAAGCCCGCCCTGCTCAAGCCG 
CGCACGCACTAA