ViewGene

Locus Name:
GeneID:
Location:

GeneID:3850
TrivialName: PA14_45840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45840
PAO1 Ortholog Locus:PA1440
Sequence Length:588
Protein Length:195
Start: 4073921
Stop: 4074508
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04829.1|AE004573_8 (AE004573) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/195 (100%), Positives = 195/195 (100%)
Sequence:
ATGTCCTTCGCCGAAAAACTGTCCCGTCTGCAAGCCTTCCTCGATGCCGATGACCTGCACGAAGAAGCGCTG
GACTACGTGGCGACCCACGGCTACCTGACCGCCCTCTCCATCTGCCCGGAGCAGGTGCCGGAGCGGGAGTGG
ATCGACGCCCTGTTCGCCGAACCGCCGCACTACCGCAGCGATGAGGAGCGCCAGGAGATCGAGACTTCCCTC
GAGCAGCTCAAGGCGCACATCACCCGCGTGCTGGCCAGCGACGAAGACCTCGAGCTGCCCTGCGACCTCGAC
CTCGGCGACGAGCCGGACGACTCCGACCTGCGCGGCTGGTGCATCGGCTTCATGGAAGGCGTGTTCCTTCGC
GAGGAAGTCTGGTTCGAGCAGGCCGAGGAGGAAGTCAGCGAGTTGCTGCTGCCGATCATGGTCGGCTCCGGC
CTGTTCGACGAGCAGCCCGAGTTCGACGAGATCGCCCGCGACCGCCACCTGGTGGACGACATGGTCGCGCAG
ATTCCCGACCTGCTGACCAACCTGTTCCTGCTCTGCCAGGCGCCGGAAGAAAAGCCCGCCCTGCTCAAGCCG
CGCACGCACTAA
Translation:
MSFAEKLSRLQAFLDADDLHEEALDYVATHGYLTALSICPEQVPEREWIDALFAEPPHYRSDEERQEIETSL
EQLKAHITRVLASDEDLELPCDLDLGDEPDDSDLRGWCIGFMEGVFLREEVWFEQAEEEVSELLLPIMVGSG
LFDEQPEFDEIARDRHLVDDMVAQIPDLLTNLFLLCQAPEEKPALLKPRTH*
AnnotationID:3857GeneID:3850
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 09:09:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1440
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7703
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24845
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37358
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3850_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3850

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6076 PA1440_tr translation of PA1440 195 99.99 99.99 0 1024.0
169714 gb|AAG04829.1|AE004573_8 (AE004573) hypothetical protein PA1440 [Pseudomonas aeruginosa PAO1] 195 99.99 99.99 0 1024.0
169716 gb|AAN70091.1|AE016648_9 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 195 77.94 86.15 0 796.0
169715 gb|AAO55163.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 195 76.92 87.17 0 814.0
GC ORFID: 46852How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1440Glimmer Score:
Start: 879988Stop: 879401
Length: 588
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1440 translation of PA1440Homolog Bit Score 399.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5982 (ORF: BLASTX 320.0), t_PA1440 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCTTCGCCGAAAAACTGTCCCGTCTGCAAGCCTTCCTCGATGCCGATGACCTGCACGAAGAAGCGCTG
GACTACGTGGCGACCCACGGCTACCTGACCGCCCTCTCCATCTGCCCGGAGCAGGTGCCGGAGCGGGAGTGG
ATCGACGCCCTGTTCGCCGAACCGCCGCACTACCGCAGCGATGAGGAGCGCCAGGAGATCGAGACTTCCCTC
GAGCAGCTCAAGGCGCACATCACCCGCGTGCTGGCCAGCGACGAAGACCTCGAGCTGCCCTGCGACCTCGAC
CTCGGCGACGAGCCGGACGACTCCGACCTGCGCGGCTGGTGCATCGGCTTCATGGAAGGCGTGTTCCTTCGC
GAGGAAGTCTGGTTCGAGCAGGCCGAGGAGGAAGTCAGCGAGTTGCTGCTGCCGATCATGGTCGGCTCCGGC
CTGTTCGACGAGCAGCCCGAGTTCGACGAGATCGCCCGCGACCGCCACCTGGTGGACGACATGGTCGCGCAG
ATTCCCGACCTGCTGACCAACCTGTTCCTGCTCTGCCAGGCGCCGGAAGAAAAGCCCGCCCTGCTCAAGCCG
CGCACGCACTAA