ViewGene

Locus Name:
GeneID:
Location:

GeneID: 382

TrivialName: PA14_43080

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_43080

PAO1 Ortholog Locus:

Sequence Length: 2043

Protein Length: 680

Start: 3832600

Stop: 3834642

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08651.1|AE004939_3 (AE004939) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 636/665 (95%), Positives = 642/665 (96%)

Sequence:

ATGTTCGCAGCAGCCAACCAGACCCACTTCAGCCTCGCCATCGACGGCCTCGCCCTCGACCTGCAGGTGCTC
TCCTTCAGCGGCCGCGAAGCCATCAGCCAGCCGTTCGCCTTCGACCTGGAGCTGGTCGGCGAACGCCCCGTG
CCGGACCTCGAAAGCCTGCTGCACAAACCCGCCTTCCTTACCCTCGGGCCCGCCGGCAACGGTATCCACGGC
CTGGTGCGCAGCGCCGGACAGGGCGACTCGGGCAAGCGCCTGACCCGCTACCGCATCACCCTCGTCCCGCAA
CTGGCCTACCTCGCCCAGCGCACCAACCAGCGCATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGGCCGG
GTGCTGGAGGAACACGGCATCCTCGCCGACGCCTACCGCTTCCAGCTCGGCACCCGCTACCCCGAGCGCGAA
TACTGCGTGCAGTACGACGAGAGCGACCTGCAGTTCGTCCAGCGCCTGTGCTGCGAGGAGGGCATCCACTTT
CATTTCCAGCACAGCGCCACGGCGCACCTGCTGGTATTCGGCGACGACCAGACGGTGTTCCCGCGGCTCGCG
CCGGTGGCCTACCAGCAGGACTCCGGCCTGGTCGCCGACCGGCCGGCGGTCAAGCGCTTCGGCGTACGCCTG
GAAACCCGCACCAGCCGCGTCACCCGCCGCGACTACGACTTCGAGAAACCGCGCCTGACGCTGGAAAGCGCC
GCCCGCGGCGAAGCCCGGCCGGACCTCGAGGACTACGACTATCCCGGTCGCTTCGTCGACCGCGAGCGCGGC
AAGCACCTGGCCAGGCGTGCCCTCGAACGGCAGCGCAGCGACTACCGCCTGGCCGAGGGCCGCAGCGACCAA
CCGTTGCTGCTCAGCGGCCACTTCCTGCCGCTGGCCGCCCATCCCCAGGCGGGCTGGAACGACCTCTGGCTG
CTCACCGAGGTGATTCACGAGGGGCGGCAGCCGCAGGTGCTGGAAGAAAGCATCGTCTCCGACACCTCGGCG
AGCCCGGACGACTTCCGGCAGGGTTACCGCAACCGCTTCCAGGCCACGCCCTGGGAGGCGTTCTTCCGTCCC
CCGCTGACACCGCCGAAGCCGCGCATCCTCGGCACGCAGAGCGCGGTGGTGACCGGTCCGAAGGGCGAGGAA
ATCCACTGCGACCGCTACGGTCGGGTGAAGGTGCaATTCCACTGGGATCGCGAGGGCCagGCCGACGACAGC
AGCAGTTGCTGGTTACGCGTTGCCTCCGGCTGGGCGGGAAGGAACTACGGCGCCATCGCCATCCCGCGGGTC
GGCATGGAGGTGCTGGTGACCTTCCTcgcaggccaccCCGACCAGCCGCTGGTCACCGGCTGCCTGTTCcac
aggGaACATCCGGTGCCCTACGAACTGCCGGCGCACAaGACCCGCAGCGTCTTCAAGAGCCTCAGCAGCCCT
GGCGGCGGTGGCTACAACGAGCTGCGCATCGAGGACCGCAAGGGCCAGGAGCAGATCTTCGTCCATGCCCAG
CGCGACTGGGACGAAAACATCCAGCACGACCAGAAGATCCGCGTCGGTCACCAACGCCACGACACCGTGGAG
GCGAACAGCTACAGCGAGTTCaaGGCCGAGGAACACCGCACCACCCACGCCGAGCGCAAGGTGGAGGTCCGC
GCCAGCGACCACCTCACCGTAGCCAACGACCAGCACCTGAAGATCGCCAGCGGCCAGTTCGTCGAGGCCGGC
CAGGAGATCCACCTGAGCAGCGGTCTGAAGGTGGTGCTGGAGGCCGGCGCCGAACTGACCCTCAAGGGCGGC
GGCAGCTTCCTCAAGCTCGACGCCAGCGGCGTGACCCTCTCCGGGGCCAACGTCCGGGTCAACTCCGGCGGC
AGCCCGGGCAACGGCAGCGGCGCGGCGCCGCTGTTGCCGGGGCCGCTGCGGCAGGCCGACAGCGACAAGGCC
GGCGCCCTCCTCACCCCGGCCCAGATCAATACCCTGAAGCGCAACGCGCCCTTCTGCGAAGAGTGCGAGAAG
TGCAAGGACGGTGCCTGTGACCTCTGA

Translation:

MFAAANQTHFSLAIDGLALDLQVLSFSGREAISQPFAFDLELVGERPVPDLESLLHKPAFLTLGPAGNGIHG
LVRSAGQGDSGKRLTRYRITLVPQLAYLAQRTNQRIFQHLTVPQIVGRVLEEHGILADAYRFQLGTRYPERE
YCVQYDESDLQFVQRLCCEEGIHFHFQHSATAHLLVFGDDQTVFPRLAPVAYQQDSGLVADRPAVKRFGVRL
ETRTSRVTRRDYDFEKPRLTLESAARGEARPDLEDYDYPGRFVDRERGKHLARRALERQRSDYRLAEGRSDQ
PLLLSGHFLPLAAHPQAGWNDLWLLTEVIHEGRQPQVLEESIVSDTSASPDDFRQGYRNRFQATPWEAFFRP
PLTPPKPRILGTQSAVVTGPKGEEIHCDRYGRVKVQFHWDREGQADDSSSCWLRVASGWAGRNYGAIAIPRV
GMEVLVTFLAGHPDQPLVTGCLFHREHPVPYELPAHKTRSVFKSLSSPGGGGYNELRIEDRKGQEQIFVHAQ
RDWDENIQHDQKIRVGHQRHDTVEANSYSEFKAEEHRTTHAERKVEVRASDHLTVANDQHLKIASGQFVEAG
QEIHLSSGLKVVLEAGAELTLKGGGSFLKLDASGVTLSGANVRVNSGGSPGNGSGAAPLLPGPLRQADSDKA
GALLTPAQINTLKRNAPFCEECEKCKDGACDL*

AnnotationID:391 GeneID:382

AnnotatorUID: danlee

Modification Date/Time: 2006-04-12 15:03:51

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3501

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|15600459|ref|NP_253953.1|  hypothetical protein PA5266 [Pseudomonas aeruginosa PAO1]
     Length=691
     Score = 1289 bits (3336),  Expect = 0.0
     Identities = 636/665 (95%), Positives = 642/665 (96%), Gaps = 0/665 (0%)

gi|28855799|gb|AAO58858.1|  Rhs element Vgr protein [Pseudomonas syringae pv. tomato str. DC3000]
     Length=680
     Score = 1103 bits (2854),  Expect = 0.0
     Identities = 525/678 (77%), Positives = 598/678 (88%), Gaps = 0/678 (0%)

gi|48732962|ref|ZP_00266705.1|  COG3501: Uncharacterized protein conserved in bacteria 
[Pseudomonas fluorescens PfO-1]
     Length=680
     Score = 1097 bits (2837),  Expect = 0.0
     Identities = 518/678 (76%), Positives = 595/678 (87%), Gaps = 0/678 (0%)

Structural Features:

COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown].
             CD-Length = 550 residues,  99.3% aligned
             Score =  589 bits (1521), Expect = 3e-169

Genomic Context:

Comment:

Highly similar to PA5266 (aka PA14_69550, GeneID 376).  
Upstream gene highly similar to hcpB, PA5267 (PA14_69560, GeneID 4144).

ReferenceID:767

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17909

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37219

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 382_cdd.html

URL:

Homologs By Global Alignment

Gene ID:382

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

638 PA5266_tr translation of PA5266 704 90.76 91.61 37 3326.0

29551 gb|AAG08651.1|AE004939_3 (AE004939) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 704 90.76 91.61 37 3326.0

29552 gb|AAO58858.1| (AE016875) Rhs element Vgr protein [Pseudomonas syringae pv. tomato str. DC3000] 680 77.20 88.08 0 2854.0

639 PA3294_tr translation of PA3294 700 71.00 80.00 32 2638.0

29553 gb|AAG06682.1|AE004751_8 (AE004751) hypothetical protein PA3294 [Pseudomonas aeruginosa PAO1] 700 71.00 80.00 32 2638.0

GC ORFID: `43384`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5266`	Glimmer Score:
Start: `1121309`	Stop: `1119267`
Length: `2043`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5266 translation of PA5266`	Homolog Bit Score `1289.0`
Other Homologs: `t_PA3294 (ORF: BLASTX 1020.0), t_PA5266 (ORF: GLIMMER)`
GC ORF Sequence
ATGTTCGCAGCAGCCAACCAGACCCACTTCAGCCTCGCCATCGACGGCCTCGCCCTCGACCTGCAGGTGCTC TCCTTCAGCGGCCGCGAAGCCATCAGCCAGCCGTTCGCCTTCGACCTGGAGCTGGTCGGCGAACGCCCCGTG CCGGACCTCGAAAGCCTGCTGCACAAACCCGCCTTCCTTACCCTCGGGCCCGCCGGCAACGGTATCCACGGC CTGGTGCGCAGCGCCGGACAGGGCGACTCGGGCAAGCGCCTGACCCGCTACCGCATCACCCTCGTCCCGCAA CTGGCCTACCTCGCCCAGCGCACCAACCAGCGCATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGGCCGG GTGCTGGAGGAACACGGCATCCTCGCCGACGCCTACCGCTTCCAGCTCGGCACCCGCTACCCCGAGCGCGAA TACTGCGTGCAGTACGACGAGAGCGACCTGCAGTTCGTCCAGCGCCTGTGCTGCGAGGAGGGCATCCACTTT CATTTCCAGCACAGCGCCACGGCGCACCTGCTGGTATTCGGCGACGACCAGACGGTGTTCCCGCGGCTCGCG CCGGTGGCCTACCAGCAGGACTCCGGCCTGGTCGCCGACCGGCCGGCGGTCAAGCGCTTCGGCGTACGCCTG GAAACCCGCACCAGCCGCGTCACCCGCCGCGACTACGACTTCGAGAAACCGCGCCTGACGCTGGAAAGCGCC GCCCGCGGCGAAGCCCGGCCGGACCTCGAGGACTACGACTATCCCGGTCGCTTCGTCGACCGCGAGCGCGGC AAGCACCTGGCCAGGCGTGCCCTCGAACGGCAGCGCAGCGACTACCGCCTGGCCGAGGGCCGCAGCGACCAA CCGTTGCTGCTCAGCGGCCACTTCCTGCCGCTGGCCGCCCATCCCCAGGCGGGCTGGAACGACCTCTGGCTG CTCACCGAGGTGATTCACGAGGGGCGGCAGCCGCAGGTGCTGGAAGAAAGCATCGTCTCCGACACCTCGGCG AGCCCGGACGACTTCCGGCAGGGTTACCGCAACCGCTTCCAGGCCACGCCCTGGGAGGCGTTCTTCCGTCCC CCGCTGACACCGCCGAAGCCGCGCATCCTCGGCACGCAGAGCGCGGTGGTGACCGGTCCGAAGGGCGAGGAA ATCCACTGCGACCGCTACGGTCGGGTGAAGGTGCaATTCCACTGGGATCGCGAGGGCCagGCCGACGACAGC AGCAGTTGCTGGTTACGCGTTGCCTCCGGCTGGGCGGGAAGGAACTACGGCGCCATCGCCATCCCGCGGGTC GGCATGGAGGTGCTGGTGACCTTCCTcgcaggccaccCCGACCAGCCGCTGGTCACCGGCTGCCTGTTCcac aggGaACATCCGGTGCCCTACGAACTGCCGGCGCACAaGACCCGCAGCGTCTTCAAGAGCCTCAGCAGCCCT GGCGGCGGTGGCTACAACGAGCTGCGCATCGAGGACCGCAAGGGCCAGGAGCAGATCTTCGTCCATGCCCAG CGCGACTGGGACGAAAACATCCAGCACGACCAGAAGATCCGCGTCGGTCACCAACGCCACGACACCGTGGAG GCGAACAGCTACAGCGAGTTCaaGGCCGAGGAACACCGCACCACCCACGCCGAGCGCAAGGTGGAGGTCCGC GCCAGCGACCACCTCACCGTAGCCAACGACCAGCACCTGAAGATCGCCAGCGGCCAGTTCGTCGAGGCCGGC CAGGAGATCCACCTGAGCAGCGGTCTGAAGGTGGTGCTGGAGGCCGGCGCCGAACTGACCCTCAAGGGCGGC GGCAGCTTCCTCAAGCTCGACGCCAGCGGCGTGACCCTCTCCGGGGCCAACGTCCGGGTCAACTCCGGCGGC AGCCCGGGCAACGGCAGCGGCGCGGCGCCGCTGTTGCCGGGGCCGCTGCGGCAGGCCGACAGCGACAAGGCC GGCGCCCTCCTCACCCCGGCCCAGATCAATACCCTGAAGCGCAACGCGCCCTTCTGCGAAGAGTGCGAGAAG TGCAAGGACGGTGCCTGTGACCTCTGA