ViewGene
Locus Name:
GeneID:
Location:

GeneID:381
TrivialName: PA14_23470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23470
PAO1 Ortholog Locus:PA3141
Sequence Length:1998
Protein Length:665
Start: 2041610
Stop: 2043607
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP57848.1| (AF508154) UDP-GlcNAc C6 dehydratase [Pseudomonas aeruginosa]
Identities = 655/665 (98%), Positives = 659/665 (99%)
Sequence:
ATGTTTGATAAAGTGCGTATGAGGCTCCTCGGGATGCCTCGCAGGTACAAGAGGATGCTGCAGATCATCGCA
GATGTGATTTTGGTATGGCTATCGCTCTGGCTAGCCTTCCTGGTCAGGCTGGGCACGGAAGACATGATCAGC
CCCTTCGAGGGCCATGCCTGGCTGTTCATCGCCGCCCCGTTGGTGGCCATTCCCCTGTTCATCCGCTTCGGC
ATGTACCGGGCGGTGATGCGCTACCTAGGCAACGACGCCCTTATCGCGATCGCCAAGGCCGTCACCATTTCC
GCGCTGGTCCTGTCGTTGCTGGTCTATTGGTACCGCTCCCCGCCGGCGGTGGTGCCGCGTTCCCTGGTGTTC
AACTACTGGTGGTTGAGCATGCTGCTGATCGGCGGCTTGCGTCTGGCTATGCGCCAGTATTTCATGGGCGAC
TGGTACTCTGCTGTGCAGTCGGTACCATTTCTCAATCGCCAGGACGGCCTGCCCAGGGTGGTCATCTATGGC
GCTGGCGCGGCCGGCAACCAGTTGGTTGCGGCATTGCGTCTCGGTCGGGCGATGCGTCCGGTGGCGTTCATC
GATGATGACAAGCAGATCGCCAACCGGGTCATCGCCGGTCTGCGGGTCTATACCGCCAAGCATATCCGCCAG
ATGATCGACGAGACGGGCGCGCAGGAGGTTCTCCTGGCGATTCCTTCCGCCACTCGGGCCCGGCGCCGAGAG
ATTCTCGAGTCCCTGGAGCCGTTCCCGCTGCACGTGCGCAGCATGCCCGGCTTCATGGACCTGGCCAGCGGC
CGGGTCAAGGTGGATGACCTGCAGGAGGTGGACATCGCTGACCTGCTGGGGCGCGACAGCGTCGCACCGCGC
AAGGAGCTGCTGGAACGGTGCATCCGCGGTCAGGTGGTGATGGTGACCGGGGCGGGCGGCTCTATCGGTTCG
GAACTCTGTCGGCAGATCATGAGTTGTTCGCCTAGCGTGCTGATCCTGTTCGAACACAGCGAATACAACCTC
TATAGCATCCATCAGGAACTGGAGCGTCGGATCAAGCGCGAGTCGCTTTCGGTGAACCTGTTGCCGATCCTC
GGTTCGGTGCGCAATCCCGAGCGCCTGGTGGACGTGATGCGTACCTGGAAGGTCAATACCGTCTACCATGCG
GCGGCCTACAAGCATGTGCCGATCGTCGAGCACAACATCGCCGAGGGCGTTCTCAACAACGTGATAGGCACC
TTGCATGCGGTGCAGGCCGCGGTGCAGGTCGGCGTGCAGAACTTCGTGCTGATTTCCACCGACAAGGCGGTG
CGACCGACCAATGTGATGGGCAGCACCAAGCGCCTGGCGGAGATGGTCCTTCAGGCGCTCAGCAACGAATCG
GCGCCGGTGCTGTTCGGCGACCGGAAGGACGTGCATCACGTCAACAAGACCCGTTTCACCATGGTCCGCTTC
GGCAACGTCCTCGGTTCGTCCGGTTCGGTCATTCCGCTGTTCCGCGAGCAGATCAAGCGCGGCGGCCCGGTG
ACGGTCACCCACCCGAGCATCACCCGTTACTTCATGACCATTCCCGAGGCGGCGCAGTTGGTCATCCAGGCC
GGTTCGATGGGGCAGGGCGGAGATGTATTCGTGCTGGACATGGGGCCGCCGGTGAAGATCCTGGAGCTCGCC
GAGAAGATGATCCACCTGTCCGGCCTGAGCGTGCGTTCCGAGCGTTCGCCCCATGGTGACATCGCCATCGAG
TTCAGTGGCCTGCGTCCTGGCGAGAAGCTCTACGAAGAGCTGCTGATCGGTGACAACGTGAATCCCACCGAC
CATCCGATGATCATGCGGGCCAACGAGGAACACCTGAGCTGGGAGGCCTTCAAGGTCGTGCTGGAGCAGTTG
CTGGCCGCCGTGGAGAAGGACGACTACTCGCGGGTTCGCCAGTTGCTGCGGGAAACCGTCAGCGGCTATGCG
CCTGACGGTGAAATCGTCGACTGGATCTATCGCCAGAGGCGGCGAGAACCCTGA
Translation:
MFDKVRMRLLGMPRRYKRMLQIIADVILVWLSLWLAFLVRLGTEDMISPFEGHAWLFIAAPLVAIPLFIRFG
MYRAVMRYLGNDALIAIAKAVTISALVLSLLVYWYRSPPAVVPRSLVFNYWWLSMLLIGGLRLAMRQYFMGD
WYSAVQSVPFLNRQDGLPRVVIYGAGAAGNQLVAALRLGRAMRPVAFIDDDKQIANRVIAGLRVYTAKHIRQ
MIDETGAQEVLLAIPSATRARRREILESLEPFPLHVRSMPGFMDLASGRVKVDDLQEVDIADLLGRDSVAPR
KELLERCIRGQVVMVTGAGGSIGSELCRQIMSCSPSVLILFEHSEYNLYSIHQELERRIKRESLSVNLLPIL
GSVRNPERLVDVMRTWKVNTVYHAAAYKHVPIVEHNIAEGVLNNVIGTLHAVQAAVQVGVQNFVLISTDKAV
RPTNVMGSTKRLAEMVLQALSNESAPVLFGDRKDVHHVNKTRFTMVRFGNVLGSSGSVIPLFREQIKRGGPV
TVTHPSITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGPPVKILELAEKMIHLSGLSVRSERSPHGDIAIE
FSGLRPGEKLYEELLIGDNVNPTDHPMIMRANEEHLSWEAFKVVLEQLLAAVEKDDYSRVRQLLRETVSGYA
PDGEIVDWIYRQRRREP*
AnnotationID:390GeneID:381
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 13:01:48
Gene Name:wbpM
Confidence Code:1
GeneProduct:nucleotide sugar epimerase/dehydratase WbpM
Cell Localization:()
Synonyms:PA3141
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02719, COG1086
Secondary Functional Category(ies):Membrane proteins; Putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein. 
             CD-Length = 530 residues, 100.0% aligned
             Score =  782 bits (2021), Expect = 0.0

COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer 
membrane / Carbohydrate transport and metabolism].
             CD-Length = 588 residues,  99.7% aligned
             Score =  667 bits (1722), Expect = 0.0






   
Genomic Context:
Part of variable O-antigen biosynthetic locus in P. aeruginosa.







   
Comment:


















    ReferenceID:765




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17907




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38223




  
Author/Investigator(s):
        Raymond,C.K., Sims,E.H., Kas,A., Spencer,D.H., Kutyavin,T.V., Ivey,R.G., Zhou,Y., Kaul,R., Clendenning,J.B. and Olson,M.V.





  
Title:
        Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa




  
PubMed:
        12057956


MedLine:
        




    
Source:
J. Bacteriol. 184 (13), 3614-3622 (2002)







    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:381
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
29476
                           gb|AAP57848.1|
                           (AF508154) UDP-GlcNAc C6 dehydratase [Pseudomonas aeruginosa]
                           665
                           98.49
                           99.09
                           0
                           3340.0
     

     
     
637
                           PA3141_tr
                           translation of PA3141
                           665
                           98.34
                           99.09
                           0
                           3339.0
     

     
     
29477
                           gb|AAG06529.1|AE004738_3
                           (AE004738) nucleotide sugar epimerase/dehydratase WbpM [Pseudomonas aeruginosa PAO1]
                           665
                           98.34
                           99.09
                           0
                           3339.0
     

     
     
29478
                           gb|AAC45867.1|
                           (U50396) WbpM [Pseudomonas aeruginosa]
                           665
                           97.89
                           98.79
                           0
                           3326.0
     

     
     
29479
                           gb|AAF23989.1|
                           (AF035937) WbpM [Pseudomonas aeruginosa]
                           665
                           97.14
                           97.89
                           0
                           3290.0
     

     






      

          
GC ORFID: 43383How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3141Glimmer Score: 

          
Start: 2912321Stop: 2910324

          
Length: 1998


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3141 translation of PA3141Homolog Bit Score 1290.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7742 (ORF: BLASTX 995.0), t_PA3141 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTGATAAAGTGCGTATGAGGCTCCTCGGGATGCCTCGCAGGTACAAGAGGATGCTGCAGATCATCGCA 
GATGTGATTTTGGTATGGCTATCGCTCTGGCTAGCCTTCCTGGTCAGGCTGGGCACGGAAGACATGATCAGC 
CCCTTCGAGGGCCATGCCTGGCTGTTCATCGCCGCCCCGTTGGTGGCCATTCCCCTGTTCATCCGCTTCGGC 
ATGTACCGGGCGGTGATGCGCTACCTAGGCAACGACGCCCTTATCGCGATCGCCAAGGCCGTCACCATTTCC 
GCGCTGGTCCTGTCGTTGCTGGTCTATTGGTACCGCTCCCCGCCGGCGGTGGTGCCGCGTTCCCTGGTGTTC 
AACTACTGGTGGTTGAGCATGCTGCTGATCGGCGGCTTGCGTCTGGCTATGCGCCAGTATTTCATGGGCGAC 
TGGTACTCTGCTGTGCAGTCGGTACCATTTCTCAATCGCCAGGACGGCCTGCCCAGGGTGGTCATCTATGGC 
GCTGGCGCGGCCGGCAACCAGTTGGTTGCGGCATTGCGTCTCGGTCGGGCGATGCGTCCGGTGGCGTTCATC 
GATGATGACAAGCAGATCGCCAACCGGGTCATCGCCGGTCTGCGGGTCTATACCGCCAAGCATATCCGCCAG 
ATGATCGACGAGACGGGCGCGCAGGAGGTTCTCCTGGCGATTCCTTCCGCCACTCGGGCCCGGCGCCGAGAG 
ATTCTCGAGTCCCTGGAGCCGTTCCCGCTGCACGTGCGCAGCATGCCCGGCTTCATGGACCTGGCCAGCGGC 
CGGGTCAAGGTGGATGACCTGCAGGAGGTGGACATCGCTGACCTGCTGGGGCGCGACAGCGTCGCACCGCGC 
AAGGAGCTGCTGGAACGGTGCATCCGCGGTCAGGTGGTGATGGTGACCGGGGCGGGCGGCTCTATCGGTTCG 
GAACTCTGTCGGCAGATCATGAGTTGTTCGCCTAGCGTGCTGATCCTGTTCGAACACAGCGAATACAACCTC 
TATAGCATCCATCAGGAACTGGAGCGTCGGATCAAGCGCGAGTCGCTTTCGGTGAACCTGTTGCCGATCCTC 
GGTTCGGTGCGCAATCCCGAGCGCCTGGTGGACGTGATGCGTACCTGGAAGGTCAATACCGTCTACCATGCG 
GCGGCCTACAAGCATGTGCCGATCGTCGAGCACAACATCGCCGAGGGCGTTCTCAACAACGTGATAGGCACC 
TTGCATGCGGTGCAGGCCGCGGTGCAGGTCGGCGTGCAGAACTTCGTGCTGATTTCCACCGACAAGGCGGTG 
CGACCGACCAATGTGATGGGCAGCACCAAGCGCCTGGCGGAGATGGTCCTTCAGGCGCTCAGCAACGAATCG 
GCGCCGGTGCTGTTCGGCGACCGGAAGGACGTGCATCACGTCAACAAGACCCGTTTCACCATGGTCCGCTTC 
GGCAACGTCCTCGGTTCGTCCGGTTCGGTCATTCCGCTGTTCCGCGAGCAGATCAAGCGCGGCGGCCCGGTG 
ACGGTCACCCACCCGAGCATCACCCGTTACTTCATGACCATTCCCGAGGCGGCGCAGTTGGTCATCCAGGCC 
GGTTCGATGGGGCAGGGCGGAGATGTATTCGTGCTGGACATGGGGCCGCCGGTGAAGATCCTGGAGCTCGCC 
GAGAAGATGATCCACCTGTCCGGCCTGAGCGTGCGTTCCGAGCGTTCGCCCCATGGTGACATCGCCATCGAG 
TTCAGTGGCCTGCGTCCTGGCGAGAAGCTCTACGAAGAGCTGCTGATCGGTGACAACGTGAATCCCACCGAC 
CATCCGATGATCATGCGGGCCAACGAGGAACACCTGAGCTGGGAGGCCTTCAAGGTCGTGCTGGAGCAGTTG 
CTGGCCGCCGTGGAGAAGGACGACTACTCGCGGGTTCGCCAGTTGCTGCGGGAAACCGTCAGCGGCTATGCG 
CCTGACGGTGAAATCGTCGACTGGATCTATCGCCAGAGGCGGCGAGAACCCTGA