ViewGene
Locus Name:
GeneID:
Location:

GeneID:3808
TrivialName: PA14_16960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16960
PAO1 Ortholog Locus:PA3665
Sequence Length:624
Protein Length:207
Start: 1453928
Stop: 1453305
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07053.1|AE004786_5 (AE004786) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/207 (99%), Positives = 206/207 (99%)
Sequence:
ATGAGCATCGCCTGGGCCCTGTTCGTACCCGCCTGCTTCGCCCTCAACCTGGCGCCGGGGCCGAACAACCTG
CTGTCGCTGAACAACGCCGCGCGGCACGGTTTCGCCACCGCCTCGCTGGCCGGCGGCGGGCGCCTGCTGGCA
TTCGCCGGCATGCTCGCCCTGGCCGCCTCCGGGCTGGCGCTGGTGCTGCACACCTCGGCCTGGCTGTTCCTG
GCGATCAAACTGCTCGGCGCTGCCTACCTGTTGTGGCTTGCGGTGCAATTGTGGCGGGCCGATGCGCAGCCA
CTGGCGAACGAAGCCAGCCCGGCGCGTCCCAGCCTCTGGCGCCTGGGGCGCCAGGAGTTCCTGGTGGCGGCG
GGCAACCCGAAAGCGATCCTGATCTTCACCGCCTTCCTGCCGCAGTTCGTCGATCCCGGCCAACCGCTGGGC
GCCCAGTTCGCCCAGCTCGGCGCGGCATTCCTGCTGCTCGAATGGCTGGCCATCGCTCTTTATTCCTATGCC
GGGCTCCACCTCGGCCGGCTGCTCGCCGGCCAGCGGGCCCGGCGTCTGTTCAACCGCGGTTGCGCCGCGCTG
CTCGGCAGCGCGGGACTGGGCCTGCTGCTCAGCCGCCGTCCGGCCTGA
Translation:
MSIAWALFVPACFALNLAPGPNNLLSLNNAARHGFATASLAGGGRLLAFAGMLALAASGLALVLHTSAWLFL
AIKLLGAAYLLWLAVQLWRADAQPLANEASPARPSLWRLGRQEFLVAAGNPKAILIFTAFLPQFVDPGQPLG
AQFAQLGAAFLLLEWLAIALYSYAGLHLGRLLAGQRARRLFNRGCAALLGSAGLGLLLSRRPA*
AnnotationID:3815GeneID:3808
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 09:09:15
Gene Name:
Confidence Code:3
GeneProduct:putative transporter, LysE family
Cell Localization:()
Synonyms:PA3665
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1280,pfam01810
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54748.1| (AE016860) transporter, LysE family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 209

 Score =  238 bits (607), Expect = 2e-62
 Identities = 119/197 (60%), Positives = 150/197 (76%)

>gb|AAN68631.1|AE016493_1 (AE016785) amino acid efflux protein, putative [Pseudomonas putida
           KT2440]
          Length = 144

 Score =  153 bits (387), Expect = 6e-37
 Identities = 78/117 (66%), Positives = 92/117 (78%), Gaps = 1/117 (0%)








 
Structural Features:
COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  99.5% aligned
Score =  103 bits (258), Expect = 4e-23
Identities = 86/207 (41%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

pfam01810, LysE, LysE type translocator. 
CD-Length = 191 residues, 100.0% aligned
Score = 85.3 bits (211), Expect = 1e-17
Identities = 59/192 (30%), Positives = 84/192 (43%), Gaps = 1/192 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7619




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24761




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31879




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3808_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3808
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6029
                           PA3665_tr
                           translation of PA3665
                           207
                           99.03
                           99.51
                           0
                           1044.0
     

     
     
168044
                           gb|AAG07053.1|AE004786_5
                           (AE004786) hypothetical protein PA3665 [Pseudomonas aeruginosa PAO1]
                           207
                           99.03
                           99.51
                           0
                           1044.0
     

     
     
168045
                           gb|AAO54748.1|
                           (AE016860) transporter, LysE family [Pseudomonas syringae pv. tomato str. DC3000]
                           209
                           57.41
                           73.68
                           2
                           603.0
     

     
     
168046
                           gb|AAN68633.1|AE016493_3
                           (AE016785) transporter, LysE family [Pseudomonas putida KT2440]
                           209
                           56.93
                           73.20
                           5
                           565.0
     

     
     
168047
                           dbj|BAC61721.1|
                           (AP005085) conserved hypothetical protein [Vibrio parahaemolyticus]
                           212
                           51.88
                           70.75
                           13
                           536.0
     

     






      

          
GC ORFID: 46810How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3665Glimmer Score: 

          
Start: 3500009Stop: 3500632

          
Length: 624


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3665 translation of PA3665Homolog Bit Score 406.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6570 (ORF: BLASTX 236.0), t_PA3665 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCGCCTGGGCCCTGTTCGTACCCGCCTGCTTCGCCCTCAACCTGGCGCCGGGGCCGAACAACCTG 
CTGTCGCTGAACAACGCCGCGCGGCACGGTTTCGCCACCGCCTCGCTGGCCGGCGGCGGGCGCCTGCTGGCA 
TTCGCCGGCATGCTCGCCCTGGCCGCCTCCGGGCTGGCGCTGGTGCTGCACACCTCGGCCTGGCTGTTCCTG 
GCGATCAAACTGCTCGGCGCTGCCTACCTGTTGTGGCTTGCGGTGCAATTGTGGCGGGCCGATGCGCAGCCA 
CTGGCGAACGAAGCCAGCCCGGCGCGTCCCAGCCTCTGGCGCCTGGGGCGCCAGGAGTTCCTGGTGGCGGCG 
GGCAACCCGAAAGCGATCCTGATCTTCACCGCCTTCCTGCCGCAGTTCGTCGATCCCGGCCAACCGCTGGGC 
GCCCAGTTCGCCCAGCTCGGCGCGGCATTCCTGCTGCTCGAATGGCTGGCCATCGCTCTTTATTCCTATGCC 
GGGCTCCACCTCGGCCGGCTGCTCGCCGGCCAGCGGGCCCGGCGTCTGTTCAACCGCGGTTGCGCCGCGCTG 
CTCGGCAGCGCGGGACTGGGCCTGCTGCTCAGCCGCCGTCCGGCCTGA