ViewGene
Locus Name:
GeneID:
Location:

GeneID:3806
TrivialName: PA14_43310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43310
PAO1 Ortholog Locus:PA1639
Sequence Length:606
Protein Length:201
Start: 3858373
Stop: 3857768
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05028.1|AE004591_8 (AE004591) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 200/201 (99%), Positives = 201/201 (100%)
Sequence:
ATGTCCCGCCCGATTCCCGTTTCCCGTGTCTTCGCCTGCCTCACCGTTCTCGCCGCCTGCGCGCACGCCGGC
GCCGCCGAGCCGGACTGGCGTGGCTATACCAGCGACCAGCAGCAGCGCAGCGTGCTGGCCGTCGAGCAGGAC
GCCGAGGCCATCAACAAGCGCTACTACGACAGTGCCTTCGAGGAATTCCTGCCGGAACTGGAGCAACTGGAA
CTCAGCCTGGCGCAGCCCGTCGTCGCCGTCGACGAGAAAGGCCTGCTGGGCGACTGGAAGTGCCGCTCGACC
CAGGCCGACCAGTACGGCATCTATCGCTATCCGAACTTCCAGTGCCGCATCCGGCGTACCGACCGCGGCCTG
TTCCTGGAGAAGACCAGCGGTTCGCAGCGGGTCAGCGGCTACCTGTTCCGCGAAGGCACGCAGCGCTACGTG
TTCCTCGGCGGCGCCACGGTCAACGACGAGCCCCAGGTGGCCTTCAGTGGCCTGGCCCACGGCGCGCCGGCT
GAGTCCGACGTGGTCGCGCTGCTGCGCCCGCACGCCGGCGGCTTCCTCCTGCTGTTCCCGGAACGGCGCGGC
GGCTACGAGGTCCTCGAGTTCAGCCGCTGA
Translation:
MSRPIPVSRVFACLTVLAACAHAGAAEPDWRGYTSDQQQRSVLAVEQDAEAINKRYYDSAFEEFLPELEQLE
LSLAQPVVAVDEKGLLGDWKCRSTQADQYGIYRYPNFQCRIRRTDRGLFLEKTSGSQRVSGYLFREGTQRYV
FLGGATVNDEPQVAFSGLAHGAPAESDVVALLRPHAGGFLLLFPERRGGYEVLEFSR*
AnnotationID:3813GeneID:3806
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 16:04:04
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1639
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7615




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24757




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3806
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6027
                           PA1639_tr
                           translation of PA1639
                           201
                           99.50
                           99.99
                           0
                           1043.0
     

     
     
168010
                           gb|AAG05028.1|AE004591_8
                           (AE004591) hypothetical protein PA1639 [Pseudomonas aeruginosa PAO1]
                           201
                           99.50
                           99.99
                           0
                           1043.0
     

     






      

          
GC ORFID: 46808How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1639Glimmer Score: 

          
Start: 1095536Stop: 1096141

          
Length: 606


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1639 translation of PA1639Homolog Bit Score 406.0

          
Other Homologs:  t_PA1639 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGCCCGATTCCCGTTTCCCGTGTCTTCGCCTGCCTCACCGTTCTCGCCGCCTGCGCGCACGCCGGC 
GCCGCCGAGCCGGACTGGCGTGGCTATACCAGCGACCAGCAGCAGCGCAGCGTGCTGGCCGTCGAGCAGGAC 
GCCGAGGCCATCAACAAGCGCTACTACGACAGTGCCTTCGAGGAATTCCTGCCGGAACTGGAGCAACTGGAA 
CTCAGCCTGGCGCAGCCCGTCGTCGCCGTCGACGAGAAAGGCCTGCTGGGCGACTGGAAGTGCCGCTCGACC 
CAGGCCGACCAGTACGGCATCTATCGCTATCCGAACTTCCAGTGCCGCATCCGGCGTACCGACCGCGGCCTG 
TTCCTGGAGAAGACCAGCGGTTCGCAGCGGGTCAGCGGCTACCTGTTCCGCGAAGGCACGCAGCGCTACGTG 
TTCCTCGGCGGCGCCACGGTCAACGACGAGCCCCAGGTGGCCTTCAGTGGCCTGGCCCACGGCGCGCCGGCT 
GAGTCCGACGTGGTCGCGCTGCTGCGCCCGCACGCCGGCGGCTTCCTCCTGCTGTTCCCGGAACGGCGCGGC 
GGCTACGAGGTCCTCGAGTTCAGCCGCTGA